Wall clock time and date at job start Sun Mar 29 2020 21:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 120.00027 * 2 1 4 4 H 1.48495 * 109.47142 * 240.00613 * 3 2 1 5 5 H 1.48504 * 109.46690 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47385 * 119.99996 * 3 2 1 7 7 C 1.37875 * 120.00531 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00413 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99625 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47134 * 180.02562 * 9 7 2 11 11 N 1.39966 * 119.89206 * 269.99496 * 10 9 7 12 12 C 1.30941 * 120.75003 * 180.02562 * 11 10 9 13 13 O 1.35819 * 119.75394 * 180.02562 * 12 11 10 14 14 C 1.40725 * 120.49855 * 0.02562 * 12 11 10 15 15 C 1.36006 * 119.74016 * 359.97438 * 14 12 11 16 16 C 1.34822 * 119.89894 * 90.01877 * 10 9 7 17 17 O 1.22097 * 120.24031 * 359.95520 * 16 10 9 18 18 H 0.96999 * 120.00550 * 359.97438 * 1 2 3 19 19 H 1.08999 * 109.47755 * 59.99615 * 9 7 2 20 20 H 1.09004 * 109.46931 * 299.99458 * 9 7 2 21 21 H 0.96698 * 113.99906 * 0.02562 * 13 12 11 22 22 H 1.07998 * 120.13289 * 179.69891 * 14 12 11 23 23 H 1.08002 * 120.35890 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6126 -0.0015 11 7 2.6573 -4.1423 -1.2148 12 6 3.5077 -5.1377 -1.2342 13 8 3.9355 -5.6358 -2.4232 14 6 3.9819 -5.6955 -0.0324 15 6 3.5539 -5.1963 1.1582 16 6 2.6387 -4.1242 1.1674 17 8 2.2432 -3.6623 2.2262 18 1 -0.4851 0.8400 0.0004 19 1 0.6247 -2.5563 -0.8919 20 1 0.6242 -2.5575 0.8881 21 1 3.5578 -5.1913 -3.1945 22 1 4.6796 -6.5196 -0.0553 23 1 3.9110 -5.6171 2.0866 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002164660.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:18 Heat of formation + Delta-G solvation = -11.927070 kcal Electronic energy + Delta-G solvation = -11970.131181 eV Core-core repulsion = 9592.483967 eV Total energy + Delta-G solvation = -2377.647214 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 196.063 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.37521 -38.15329 -35.67937 -33.99931 -32.40933 -30.34630 -27.56228 -24.82521 -23.09063 -21.87516 -19.06786 -17.49999 -16.67323 -16.01217 -15.34696 -15.10228 -14.41205 -13.98842 -13.80688 -13.43420 -12.72982 -12.37656 -11.52870 -11.29377 -10.86921 -10.85220 -10.64292 -10.27366 -10.08740 -9.35053 -9.04188 -8.52948 -7.67762 -6.14797 -4.20281 0.83197 2.31157 2.78128 3.29738 3.33001 3.37043 3.75101 3.96368 4.38095 4.70030 5.03076 5.18746 5.21417 5.80834 6.06404 6.21575 6.92731 7.03927 7.24449 7.47658 7.78843 8.01004 8.32760 8.66702 8.82071 9.43426 10.93837 Molecular weight = 196.06amu Principal moments of inertia in cm(-1) A = 0.045037 B = 0.010787 C = 0.009823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.565535 B = 2595.200458 C = 2849.908952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.253 3.747 10 N -0.354 5.354 11 N -0.276 5.276 12 C 0.263 3.737 13 O -0.463 6.463 14 C -0.090 4.090 15 C -0.147 4.147 16 C 0.479 3.521 17 O -0.538 6.538 18 H 0.267 0.733 19 H 0.052 0.948 20 H 0.065 0.935 21 H 0.406 0.594 22 H 0.147 0.853 23 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.583 -9.814 -3.245 12.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.733 3.267 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.569 4.569 8 H 0.077 0.923 9 C 0.136 3.864 10 N -0.178 5.178 11 N -0.111 5.111 12 C 0.048 3.952 13 O -0.258 6.258 14 C -0.114 4.114 15 C -0.177 4.177 16 C 0.273 3.727 17 O -0.416 6.416 18 H 0.077 0.923 19 H 0.070 0.930 20 H 0.083 0.917 21 H 0.261 0.739 22 H 0.165 0.835 23 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.050 -9.277 -2.931 11.457 hybrid contribution 0.655 0.746 -0.019 0.993 sum 6.705 -8.531 -2.950 11.245 Atomic orbital electron populations 1.69906 1.05991 1.27572 1.49580 1.24892 0.94977 0.99282 0.94621 0.86427 0.79447 0.82047 0.78773 1.20090 1.20945 1.20016 1.21202 0.93370 0.89868 1.52416 0.92279 1.19756 0.86395 0.80211 0.99999 1.49970 1.38413 1.30127 0.99263 1.74996 1.13516 1.10810 1.11790 1.20065 0.94967 0.92856 0.87297 1.85106 1.67716 1.59036 1.13904 1.21225 0.99870 1.00513 0.89820 1.22718 0.98481 0.97260 0.99258 1.17548 0.84719 0.85561 0.84835 1.90983 1.59424 1.62805 1.28428 0.92320 0.93020 0.91735 0.73932 0.83529 0.82122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.29 55.43 0.74 -25.51 14 2 C 0.07 1.86 5.46 -17.82 -0.10 1.77 14 3 Si 0.91 21.89 29.54 -169.99 -5.02 16.87 14 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 14 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 14 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 14 7 C -0.53 -15.31 9.39 -34.44 -0.32 -15.64 14 8 H 0.06 1.72 7.81 -52.48 -0.41 1.31 14 9 C 0.25 6.83 5.46 -5.19 -0.03 6.80 14 10 N -0.35 -8.26 3.49 -64.52 -0.23 -8.49 14 11 N -0.28 -5.45 11.46 30.59 0.35 -5.10 14 12 C 0.26 4.12 7.95 -16.99 -0.14 3.99 14 13 O -0.46 -5.64 13.58 -19.17 -0.26 -5.90 14 14 C -0.09 -1.24 10.00 -39.44 -0.39 -1.63 14 15 C -0.15 -2.37 10.01 -39.35 -0.39 -2.76 14 16 C 0.48 10.66 7.50 -15.20 -0.11 10.54 14 17 O -0.54 -13.97 16.71 4.83 0.08 -13.88 14 18 H 0.27 7.39 8.31 -40.82 -0.34 7.05 14 19 H 0.05 1.41 8.14 -51.93 -0.42 0.98 14 20 H 0.06 1.88 7.42 -51.93 -0.39 1.49 14 21 H 0.41 3.58 8.97 45.56 0.41 3.99 14 22 H 0.15 1.42 8.06 -52.49 -0.42 1.00 14 23 H 0.16 2.04 8.06 -52.49 -0.42 1.61 14 LS Contribution 221.92 15.07 3.34 3.34 Total: -1.00 -33.52 221.92 -3.27 -36.79 By element: Atomic # 1 Polarization: -0.39 SS G_CDS: -0.79 Total: -1.18 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -1.49 Total: 3.06 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.86 Total: -39.10 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.18 Total: -19.79 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -33.52 -3.27 -36.79 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002164660.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.867 kcal (2) G-P(sol) polarization free energy of solvation -33.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds