Wall clock time and date at job start Sun Mar 29 2020 21:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47106 * 180.02562 * 9 7 2 11 11 C 1.36839 * 119.68874 * 89.99942 * 10 9 7 12 12 C 1.35022 * 119.68459 * 179.97438 * 11 10 9 13 13 C 1.41578 * 119.11205 * 0.02562 * 12 11 10 14 14 O 1.21782 * 120.30786 * 179.97438 * 13 12 11 15 15 N 1.34830 * 119.38702 * 359.97438 * 13 12 11 16 16 H 0.97000 * 119.87203 * 179.97438 * 15 13 12 17 17 C 1.34542 * 119.68975 * 269.72092 * 10 9 7 18 18 O 1.21586 * 119.53212 * 0.02562 * 17 10 9 19 19 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 21 21 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 22 22 H 1.07997 * 120.15877 * 0.02562 * 11 10 9 23 23 H 1.08002 * 120.44578 * 179.97438 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 6 2.6425 -4.1283 1.1874 12 6 3.5195 -5.1549 1.1875 13 6 3.9680 -5.6778 -0.0493 14 8 4.7593 -6.6032 -0.0746 15 7 3.5111 -5.1418 -1.1990 16 1 3.8140 -5.4943 -2.0504 17 6 2.6326 -4.1223 -1.1701 18 8 2.2256 -3.6520 -2.2148 19 1 -0.4849 0.8401 0.0004 20 1 0.6240 -2.5575 0.8880 21 1 0.6246 -2.5563 -0.8919 22 1 2.2890 -3.7167 2.1212 23 1 3.8748 -5.5711 2.1187 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002325345.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:21 Heat of formation + Delta-G solvation = -47.204753 kcal Electronic energy + Delta-G solvation = -12063.259429 eV Core-core repulsion = 9684.082460 eV Total energy + Delta-G solvation = -2379.176969 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 196.063 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.58718 -38.41943 -36.47791 -34.43948 -32.92710 -30.91488 -27.50563 -24.40516 -23.79584 -22.12305 -18.62065 -18.11881 -16.99614 -16.59412 -15.82809 -15.41468 -14.60674 -14.34103 -13.79640 -13.28349 -12.83830 -12.66663 -11.68185 -11.59126 -10.94802 -10.86599 -10.51076 -10.22994 -9.87759 -9.84947 -9.69021 -8.70517 -7.95752 -6.33447 -4.41598 1.47209 2.50544 2.75202 3.18933 3.24005 3.27403 3.73048 3.99911 4.24331 4.91016 5.02476 5.33086 5.75615 5.88519 6.39057 6.53506 6.80247 6.92119 7.11313 7.59599 7.77917 7.83415 7.96161 8.47825 8.62283 9.25599 10.74788 Molecular weight = 196.06amu Principal moments of inertia in cm(-1) A = 0.058259 B = 0.009909 C = 0.009663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.499589 B = 2824.965688 C = 2897.029671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.069 3.931 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.235 3.765 10 N -0.512 5.512 11 C 0.213 3.787 12 C -0.347 4.347 13 C 0.553 3.447 14 O -0.548 6.548 15 N -0.665 5.665 16 H 0.422 0.578 17 C 0.687 3.313 18 O -0.533 6.533 19 H 0.269 0.731 20 H 0.055 0.945 21 H 0.062 0.938 22 H 0.174 0.826 23 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.835 -5.364 3.250 6.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.135 4.135 3 Si 0.733 3.267 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.118 3.882 10 N -0.228 5.228 11 C 0.084 3.916 12 C -0.374 4.374 13 C 0.351 3.649 14 O -0.427 6.427 15 N -0.333 5.333 16 H 0.262 0.738 17 C 0.389 3.611 18 O -0.405 6.405 19 H 0.079 0.921 20 H 0.073 0.927 21 H 0.080 0.920 22 H 0.191 0.809 23 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.701 -5.293 2.690 6.523 hybrid contribution 0.579 0.830 -0.286 1.052 sum 3.280 -4.463 2.403 6.037 Atomic orbital electron populations 1.69903 1.06060 1.27916 1.48632 1.24904 0.94969 0.99500 0.94172 0.86416 0.79473 0.81867 0.78941 1.19944 1.20897 1.19920 1.21221 0.93524 0.89885 1.53704 0.91913 1.19945 0.86718 0.80837 1.00700 1.45627 1.41523 1.32594 1.03057 1.22473 0.88875 0.89203 0.91061 1.21632 1.10948 1.06406 0.98451 1.17347 0.80694 0.82523 0.84352 1.90844 1.35049 1.29230 1.87590 1.44759 1.42734 1.33489 1.12304 0.73822 1.16018 0.80012 0.80001 0.85089 1.91035 1.58604 1.60582 1.30267 0.92100 0.92747 0.91964 0.80898 0.82134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.06 13.29 55.43 0.74 -23.33 14 2 C 0.07 1.79 5.46 -17.82 -0.10 1.70 14 3 Si 0.91 20.31 29.54 -169.99 -5.02 15.29 14 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 14 5 H -0.28 -6.27 7.11 56.52 0.40 -5.86 14 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 14 7 C -0.55 -13.97 9.38 -34.44 -0.32 -14.29 14 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 14 9 C 0.24 5.39 5.10 -5.19 -0.03 5.37 14 10 N -0.51 -9.92 2.59 -122.82 -0.32 -10.24 14 11 C 0.21 3.22 10.38 -16.46 -0.17 3.05 14 12 C -0.35 -5.12 10.00 -39.45 -0.39 -5.51 14 13 C 0.55 9.58 7.73 -14.96 -0.12 9.47 14 14 O -0.55 -10.74 17.94 5.12 0.09 -10.65 14 15 N -0.66 -11.41 5.23 -18.50 -0.10 -11.51 14 16 H 0.42 6.37 8.88 -40.82 -0.36 6.01 14 17 C 0.69 13.85 8.37 -87.28 -0.73 13.12 14 18 O -0.53 -12.56 16.66 5.29 0.09 -12.48 14 19 H 0.27 6.93 8.31 -40.82 -0.34 6.59 14 20 H 0.05 1.19 8.03 -51.93 -0.42 0.77 14 21 H 0.06 1.60 7.37 -51.93 -0.38 1.22 14 22 H 0.17 2.04 8.06 -52.49 -0.42 1.62 14 23 H 0.16 1.96 8.06 -52.49 -0.42 1.53 14 LS Contribution 219.51 15.07 3.31 3.31 Total: -1.00 -30.41 219.51 -4.62 -35.04 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -1.55 Total: 1.68 kcal Atomic # 6 Polarization: 14.75 SS G_CDS: -1.86 Total: 12.89 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: 0.32 Total: -45.08 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: 0.18 Total: -23.13 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -30.41 -4.62 -35.04 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002325345.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.168 kcal (2) G-P(sol) polarization free energy of solvation -30.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds