Wall clock time and date at job start Sun Mar 29 2020 21:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47106 * 180.02562 * 9 7 2 11 11 C 1.36839 * 119.68874 * 89.99942 * 10 9 7 12 12 C 1.35022 * 119.68459 * 179.97438 * 11 10 9 13 13 C 1.41578 * 119.11205 * 0.02562 * 12 11 10 14 14 O 1.21782 * 120.30786 * 179.97438 * 13 12 11 15 15 N 1.34830 * 119.38702 * 359.97438 * 13 12 11 16 16 H 0.97000 * 119.87203 * 179.97438 * 15 13 12 17 17 C 1.34542 * 119.68975 * 269.72092 * 10 9 7 18 18 O 1.21586 * 119.53212 * 0.02562 * 17 10 9 19 19 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 21 21 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 22 22 H 1.07997 * 120.15877 * 0.02562 * 11 10 9 23 23 H 1.08002 * 120.44578 * 179.97438 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 6 2.6425 -4.1283 1.1874 12 6 3.5195 -5.1549 1.1875 13 6 3.9680 -5.6778 -0.0493 14 8 4.7593 -6.6032 -0.0746 15 7 3.5111 -5.1418 -1.1990 16 1 3.8140 -5.4943 -2.0504 17 6 2.6326 -4.1223 -1.1701 18 8 2.2256 -3.6520 -2.2148 19 1 -0.4849 0.8401 0.0004 20 1 0.6240 -2.5575 0.8880 21 1 0.6246 -2.5563 -0.8919 22 1 2.2890 -3.7167 2.1212 23 1 3.8748 -5.5711 2.1187 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002325345.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:21 Heat of formation + Delta-G solvation = -68.947903 kcal Electronic energy + Delta-G solvation = -12064.202283 eV Core-core repulsion = 9684.082460 eV Total energy + Delta-G solvation = -2380.119823 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 196.063 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.07753 -39.94640 -38.04652 -36.02947 -34.76775 -32.39343 -29.31497 -25.81410 -25.53636 -23.72041 -20.08267 -19.58861 -18.86419 -18.05483 -17.42509 -17.09762 -16.09621 -16.03038 -15.37066 -14.64526 -14.47412 -14.26862 -13.48807 -13.26557 -12.65938 -12.62754 -12.30376 -11.88327 -11.52611 -11.38165 -11.35587 -10.67562 -9.41927 -8.29744 -6.44294 0.17825 0.98282 1.24217 1.42457 1.45034 1.52520 2.28292 2.39712 2.59846 3.04244 3.69895 4.03745 4.41165 4.53863 4.97868 5.05913 5.09378 5.35749 5.55364 5.63601 5.86216 6.34352 6.49604 6.61865 7.01206 7.26827 8.77715 Molecular weight = 196.06amu Principal moments of inertia in cm(-1) A = 0.058259 B = 0.009909 C = 0.009663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.499589 B = 2824.965688 C = 2897.029671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.022 3.978 3 Si 0.964 3.036 4 H -0.281 1.281 5 H -0.279 1.279 6 H -0.260 1.260 7 C -0.556 4.556 8 H 0.057 0.943 9 C 0.250 3.750 10 N -0.518 5.518 11 C 0.209 3.791 12 C -0.326 4.326 13 C 0.547 3.453 14 O -0.570 6.570 15 N -0.653 5.653 16 H 0.429 0.571 17 C 0.686 3.314 18 O -0.578 6.578 19 H 0.271 0.729 20 H 0.068 0.932 21 H 0.026 0.974 22 H 0.212 0.788 23 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.668 -5.365 4.791 8.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.179 4.179 3 Si 0.789 3.211 4 H -0.207 1.207 5 H -0.204 1.204 6 H -0.184 1.184 7 C -0.595 4.595 8 H 0.075 0.925 9 C 0.131 3.869 10 N -0.235 5.235 11 C 0.083 3.917 12 C -0.352 4.352 13 C 0.347 3.653 14 O -0.450 6.450 15 N -0.321 5.321 16 H 0.270 0.730 17 C 0.388 3.612 18 O -0.453 6.453 19 H 0.080 0.920 20 H 0.086 0.914 21 H 0.044 0.956 22 H 0.229 0.771 23 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 3.564 -5.335 4.272 7.708 hybrid contribution 0.356 0.735 -0.765 1.118 sum 3.920 -4.600 3.508 6.988 Atomic orbital electron populations 1.69990 1.07267 1.28717 1.49584 1.25668 0.95711 1.02601 0.93906 0.85506 0.78347 0.78288 0.78953 1.20716 1.20414 1.18412 1.21494 0.93443 0.91241 1.53280 0.92467 1.19525 0.86802 0.81132 0.99467 1.45412 1.41538 1.32259 1.04278 1.23031 0.88780 0.89167 0.90683 1.21964 1.09484 1.05274 0.98463 1.17820 0.80361 0.82232 0.84929 1.90850 1.36135 1.30264 1.87789 1.44657 1.41745 1.32500 1.13170 0.72967 1.16136 0.80048 0.80207 0.84833 1.91003 1.60287 1.62138 1.31900 0.91971 0.91413 0.95583 0.77108 0.78692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.62 13.29 21.45 0.28 -49.33 14 2 C 0.02 1.15 5.46 84.65 0.46 1.62 14 3 Si 0.96 40.98 29.54 68.60 2.03 43.00 14 4 H -0.28 -12.20 7.11 99.48 0.71 -11.50 14 5 H -0.28 -11.55 7.11 99.48 0.71 -10.85 14 6 H -0.26 -10.37 7.11 99.48 0.71 -9.66 14 7 C -0.56 -28.22 9.38 25.60 0.24 -27.98 14 8 H 0.06 2.90 7.81 -2.91 -0.02 2.88 14 9 C 0.25 11.38 5.10 85.64 0.44 11.82 14 10 N -0.52 -19.48 2.59 -660.90 -1.71 -21.19 14 11 C 0.21 5.67 10.38 83.17 0.86 6.53 14 12 C -0.33 -8.43 10.00 22.35 0.22 -8.21 14 13 C 0.55 17.76 7.73 85.06 0.66 18.42 14 14 O -0.57 -21.16 17.94 -4.61 -0.08 -21.25 14 15 N -0.65 -21.81 5.23 -448.94 -2.35 -24.16 14 16 H 0.43 12.77 8.88 -92.71 -0.82 11.95 14 17 C 0.69 27.44 8.37 179.18 1.50 28.95 14 18 O -0.58 -27.83 16.66 -3.99 -0.07 -27.90 14 19 H 0.27 13.90 8.31 -92.71 -0.77 13.13 14 20 H 0.07 2.90 8.03 -2.39 -0.02 2.88 14 21 H 0.03 1.37 7.37 -2.39 -0.02 1.36 14 22 H 0.21 4.05 8.06 -2.91 -0.02 4.03 14 23 H 0.20 3.76 8.06 -2.91 -0.02 3.74 14 Total: -1.00 -64.64 219.51 2.90 -61.74 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: 0.42 Total: 7.95 kcal Atomic # 6 Polarization: 26.76 SS G_CDS: 4.38 Total: 31.14 kcal Atomic # 7 Polarization: -90.90 SS G_CDS: -3.78 Total: -94.68 kcal Atomic # 8 Polarization: -49.00 SS G_CDS: -0.15 Total: -49.15 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.00 kcal Total: -64.64 2.90 -61.74 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002325345.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.213 kcal (2) G-P(sol) polarization free energy of solvation -64.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds