Wall clock time and date at job start Sun Mar 29 2020 22:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99836 * 2 1 4 4 H 1.48502 * 109.47330 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47152 * 299.99732 * 3 2 1 6 6 H 1.48503 * 109.47271 * 59.99822 * 3 2 1 7 7 C 1.37878 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00063 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00060 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47328 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47046 * 184.82224 * 10 9 7 12 12 C 1.46834 * 111.00154 * 65.86237 * 11 10 9 13 13 C 1.53298 * 109.39762 * 170.24542 * 12 11 10 14 14 C 1.51434 * 108.24074 * 53.79419 * 13 12 11 15 15 O 1.20760 * 121.10697 * 130.95288 * 14 13 12 16 16 C 1.51426 * 117.77960 * 310.96429 * 14 13 12 17 17 C 1.46823 * 111.00190 * 301.17447 * 11 10 9 18 18 H 0.96996 * 120.00021 * 0.02562 * 1 2 3 19 19 H 1.08997 * 109.47424 * 59.99363 * 9 7 2 20 20 H 1.09004 * 109.46914 * 299.99607 * 9 7 2 21 21 H 1.08998 * 109.47201 * 64.81960 * 10 9 7 22 22 H 1.09002 * 109.46890 * 304.81862 * 10 9 7 23 23 H 1.08998 * 109.48355 * 50.26505 * 12 11 10 24 24 H 1.09005 * 109.47912 * 290.22504 * 12 11 10 25 25 H 1.09005 * 109.70540 * 173.48101 * 13 12 11 26 26 H 1.08998 * 109.70828 * 294.06092 * 13 12 11 27 27 H 1.09007 * 109.70908 * 168.71627 * 16 14 13 28 28 H 1.08996 * 109.71679 * 289.34495 * 16 14 13 29 29 H 1.09003 * 109.48728 * 69.77515 * 17 11 10 30 30 H 1.09002 * 109.49633 * 309.74086 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5146 -4.9311 -0.1159 12 6 0.8478 -5.0366 -1.4198 13 6 0.3055 -6.4590 -1.6007 14 6 -0.5623 -6.7910 -0.4049 15 8 -1.6680 -7.2557 -0.5462 16 6 0.0025 -6.5207 0.9738 17 6 0.5641 -5.0944 0.9911 18 1 -0.4850 0.8400 -0.0004 19 1 0.6247 -2.5571 -0.8896 20 1 0.6242 -2.5567 0.8904 21 1 2.8139 -3.6541 0.9305 22 1 2.9275 -3.5569 -0.8432 23 1 1.5627 -4.8165 -2.2126 24 1 0.0236 -4.3247 -1.4653 25 1 -0.2891 -6.5125 -2.5127 26 1 1.1349 -7.1637 -1.6609 27 1 -0.7873 -6.6139 1.7194 28 1 0.7993 -7.2321 1.1908 29 1 -0.2521 -4.3809 0.8778 30 1 1.0741 -4.9159 1.9378 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019424094.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:20 Heat of formation + Delta-G solvation = -48.958415 kcal Electronic energy + Delta-G solvation = -12581.897762 eV Core-core repulsion = 10376.592275 eV Total energy + Delta-G solvation = -2205.305486 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.69336 -37.43360 -33.40174 -31.65385 -31.07666 -28.39212 -24.56167 -23.40605 -22.56814 -20.44976 -18.46915 -16.54388 -15.74682 -15.31981 -14.87039 -14.69661 -14.56821 -14.11647 -13.29551 -13.02046 -12.38295 -12.00088 -11.70217 -11.50394 -11.38216 -11.13763 -10.94455 -10.77344 -10.58553 -9.95077 -9.81245 -9.24738 -9.19273 -8.41944 -7.67829 -6.07202 -4.10676 2.09606 3.26671 3.34586 3.38298 4.20884 4.37924 4.46608 4.99023 5.18880 5.19833 5.28351 5.43553 5.59463 5.70278 5.92425 6.01948 6.09783 6.16869 6.25264 6.32220 6.58057 6.80808 7.35529 7.38816 7.57727 7.66313 7.73542 7.92369 8.34325 8.96668 9.54277 11.03840 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.065531 B = 0.007693 C = 0.007546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.176222 B = 3638.903334 C = 3709.885920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.057 0.943 9 C -0.012 4.012 10 C 0.058 3.942 11 N -0.546 5.546 12 C 0.058 3.942 13 C -0.164 4.164 14 C 0.365 3.635 15 O -0.470 6.470 16 C -0.165 4.165 17 C 0.059 3.941 18 H 0.260 0.740 19 H 0.017 0.983 20 H 0.018 0.982 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.083 0.917 24 H 0.047 0.953 25 H 0.086 0.914 26 H 0.102 0.898 27 H 0.087 0.913 28 H 0.102 0.898 29 H 0.048 0.952 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.390 -10.371 -0.298 10.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.050 4.050 10 C -0.068 4.068 11 N -0.270 5.270 12 C -0.070 4.070 13 C -0.203 4.203 14 C 0.241 3.759 15 O -0.345 6.345 16 C -0.203 4.203 17 C -0.070 4.070 18 H 0.070 0.930 19 H 0.035 0.965 20 H 0.036 0.964 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.102 0.898 24 H 0.066 0.934 25 H 0.105 0.895 26 H 0.120 0.880 27 H 0.105 0.895 28 H 0.120 0.880 29 H 0.066 0.934 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.004 -10.880 -0.341 11.068 hybrid contribution -0.104 1.742 -0.035 1.746 sum 1.899 -9.138 -0.376 9.340 Atomic orbital electron populations 1.69970 1.06115 1.26617 1.50638 1.25037 0.94844 0.99391 0.95164 0.86525 0.80129 0.83682 0.77614 1.19652 1.21003 1.20995 1.21183 0.93085 0.90846 1.50846 0.92445 1.19699 0.94985 0.92901 0.97383 1.22350 0.96804 0.86320 1.01357 1.62206 1.26976 1.36530 1.01254 1.22010 0.98561 0.93615 0.92838 1.22406 1.00641 0.99580 0.97627 1.25010 0.86067 0.71395 0.93422 1.90374 1.20842 1.34007 1.89263 1.22411 1.02208 0.99721 0.95942 1.21999 0.95574 0.93491 0.95902 0.92994 0.96451 0.96403 0.91678 0.91612 0.89826 0.93445 0.89497 0.87979 0.89481 0.87987 0.93368 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C -0.01 -0.28 4.26 -27.88 -0.12 -0.40 16 10 C 0.06 1.14 5.26 -3.82 -0.02 1.12 16 11 N -0.55 -9.09 4.77 -234.36 -1.12 -10.21 16 12 C 0.06 0.92 4.98 -3.71 -0.02 0.90 16 13 C -0.16 -2.17 6.35 -27.37 -0.17 -2.34 16 14 C 0.36 5.45 6.80 -28.32 -0.19 5.26 16 15 O -0.47 -8.40 17.91 6.00 0.11 -8.29 16 16 C -0.16 -2.18 6.35 -27.37 -0.17 -2.36 16 17 C 0.06 0.93 4.77 -3.71 -0.02 0.91 16 18 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 19 H 0.02 0.46 6.55 -51.93 -0.34 0.12 16 20 H 0.02 0.47 6.89 -51.93 -0.36 0.11 16 21 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 22 H 0.07 1.27 8.02 -51.93 -0.42 0.85 16 23 H 0.08 1.24 7.99 -51.93 -0.42 0.83 16 24 H 0.05 0.86 6.81 -51.93 -0.35 0.51 16 25 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 27 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.05 0.88 6.93 -51.93 -0.36 0.53 16 30 H 0.08 1.26 8.08 -51.93 -0.42 0.84 16 LS Contribution 248.18 15.07 3.74 3.74 Total: -1.00 -30.43 248.18 -7.00 -37.43 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: -4.32 Total: -3.11 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: -1.13 Total: -10.03 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: -0.38 Total: -36.02 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.11 Total: -8.29 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.43 -7.00 -37.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019424094.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.529 kcal (2) G-P(sol) polarization free energy of solvation -30.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds