Wall clock time and date at job start Sun Mar 29 2020 21:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 S 1.81002 * 109.47156 * 179.97438 * 9 7 2 11 11 C 1.76193 * 100.00049 * 180.02562 * 10 9 7 12 12 N 1.32561 * 119.22481 * 359.72684 * 11 10 9 13 13 C 1.32254 * 120.73551 * 179.71922 * 12 11 10 14 14 C 1.38624 * 119.20200 * 0.54564 * 13 12 11 15 15 C 1.38619 * 118.57093 * 359.73398 * 14 13 12 16 16 N 1.32255 * 119.20153 * 359.97438 * 15 14 13 17 17 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 18 18 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 19 19 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 20 20 H 1.07996 * 120.40190 * 180.27953 * 13 12 11 21 21 H 1.08007 * 120.71480 * 179.75357 * 14 13 12 22 22 H 1.08007 * 120.39960 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 16 2.4271 -3.8750 0.0005 11 6 1.3070 -5.2351 -0.0002 12 7 0.0025 -4.9992 0.0049 13 6 -0.8649 -5.9976 -0.0011 14 6 -0.3950 -7.3017 -0.0013 15 6 0.9750 -7.5128 -0.0009 16 7 1.7885 -6.4701 -0.0008 17 1 -0.4850 0.8401 0.0004 18 1 0.6239 -2.5567 0.8903 19 1 0.6246 -2.5571 -0.8897 20 1 -1.9265 -5.7992 -0.0014 21 1 -1.0816 -8.1355 -0.0022 22 1 1.3733 -8.5168 -0.0015 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019870143.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:22 Heat of formation + Delta-G solvation = 36.811768 kcal Electronic energy + Delta-G solvation = -9600.134873 eV Core-core repulsion = 7667.354004 eV Total energy + Delta-G solvation = -1932.780868 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 196.037 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.34816 -33.45463 -33.09578 -31.68699 -28.57719 -24.41553 -24.15549 -22.82882 -18.13504 -17.10640 -16.26790 -15.55338 -14.80367 -14.60365 -14.20586 -13.26947 -12.95648 -12.36599 -12.27633 -11.03347 -10.91175 -10.67179 -10.55487 -10.10506 -9.80869 -9.63592 -9.25811 -8.84066 -8.61797 -6.94363 -6.19736 -4.26853 1.12759 1.42926 2.11122 3.25857 3.31552 3.34593 3.49803 4.03629 4.33838 4.59270 4.80336 5.04319 5.16896 5.29000 5.39916 5.97533 6.54044 7.14488 7.24719 7.28223 7.70359 7.95583 8.30054 8.74588 9.36498 10.90799 Molecular weight = 196.04amu Principal moments of inertia in cm(-1) A = 0.083129 B = 0.008588 C = 0.007817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 336.746119 B = 3259.408231 C = 3581.009483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.070 3.930 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.526 4.526 8 H 0.067 0.933 9 C 0.070 3.930 10 S -0.038 6.038 11 C 0.303 3.697 12 N -0.515 5.515 13 C 0.161 3.839 14 C -0.262 4.262 15 C 0.155 3.845 16 N -0.515 5.515 17 H 0.266 0.734 18 H 0.052 0.948 19 H 0.051 0.949 20 H 0.164 0.836 21 H 0.140 0.860 22 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.263 -11.050 -0.011 11.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.135 4.135 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.566 4.566 8 H 0.085 0.915 9 C -0.078 4.078 10 S 0.201 5.799 11 C -0.070 4.070 12 N -0.233 5.233 13 C -0.009 4.009 14 C -0.289 4.289 15 C -0.015 4.015 16 N -0.233 5.233 17 H 0.076 0.924 18 H 0.070 0.930 19 H 0.070 0.930 20 H 0.181 0.819 21 H 0.158 0.842 22 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.508 -10.005 0.001 10.018 hybrid contribution -1.778 -0.070 -0.013 1.780 sum -1.270 -10.075 -0.013 10.155 Atomic orbital electron populations 1.69980 1.06119 1.27359 1.48675 1.24941 0.94972 0.99193 0.94409 0.86346 0.79739 0.82142 0.78393 1.20282 1.20904 1.19492 1.20672 0.93368 0.88828 1.53719 0.91463 1.21340 0.94284 0.89839 1.02344 1.85813 1.12166 0.94853 1.87081 1.25643 0.92540 0.96103 0.92720 1.69047 1.02533 1.36098 1.15580 1.23236 1.00093 0.88482 0.89113 1.22650 0.97983 0.99375 1.08928 1.23156 0.90253 0.98112 0.89996 1.68632 1.39828 0.98627 1.16177 0.92417 0.92997 0.93033 0.81850 0.84173 0.81908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.77 13.29 55.43 0.74 -25.03 14 2 C 0.07 1.95 5.46 -17.82 -0.10 1.86 14 3 Si 0.91 21.16 29.54 -169.99 -5.02 16.14 14 4 H -0.28 -6.36 7.11 56.52 0.40 -5.95 14 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 14 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 14 7 C -0.53 -14.76 9.13 -34.44 -0.31 -15.08 14 8 H 0.07 1.84 7.71 -52.49 -0.40 1.44 14 9 C 0.07 1.85 4.56 36.01 0.16 2.02 14 10 S -0.04 -0.88 22.17 -107.50 -2.38 -3.26 14 11 C 0.30 6.43 7.85 -90.83 -0.71 5.71 14 12 N -0.51 -10.60 9.14 -13.44 -0.12 -10.73 14 13 C 0.16 2.49 11.30 -17.23 -0.19 2.30 14 14 C -0.26 -3.32 10.16 -39.30 -0.40 -3.72 14 15 C 0.16 2.19 11.30 -17.23 -0.19 1.99 14 16 N -0.52 -9.68 10.40 -13.44 -0.14 -9.82 14 17 H 0.27 7.26 8.31 -40.82 -0.34 6.92 14 18 H 0.05 1.46 8.11 -51.92 -0.42 1.04 14 19 H 0.05 1.45 8.11 -51.91 -0.42 1.03 14 20 H 0.16 1.96 8.06 -52.49 -0.42 1.53 14 21 H 0.14 1.20 8.06 -52.48 -0.42 0.77 14 22 H 0.16 1.59 8.06 -52.48 -0.42 1.17 14 LS Contribution 222.03 15.07 3.35 3.35 Total: -1.00 -31.22 222.03 -6.98 -38.21 By element: Atomic # 1 Polarization: -2.29 SS G_CDS: -1.65 Total: -3.94 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -1.75 Total: -4.92 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.47 Total: -45.57 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -2.38 Total: -3.26 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -31.22 -6.98 -38.21 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019870143.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.018 kcal (2) G-P(sol) polarization free energy of solvation -31.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds