Wall clock time and date at job start Sun Mar 29 2020 21:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86793 * 120.00311 * 2 1 4 4 H 1.48504 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47203 * 299.99653 * 3 2 1 6 6 H 1.48498 * 109.47560 * 59.99684 * 3 2 1 7 7 C 1.37881 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00230 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00036 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47389 * 180.02562 * 9 7 2 11 11 C 1.46901 * 111.00082 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.46801 * 180.02562 * 11 10 9 13 13 C 1.38425 * 122.53762 * 89.99949 * 12 11 10 14 14 C 1.33390 * 114.92123 * 179.97438 * 13 12 11 15 15 S 1.75891 * 109.59251 * 0.02562 * 14 13 12 16 16 C 1.33383 * 122.54063 * 269.97222 * 12 11 10 17 17 H 0.97003 * 120.00016 * 0.02562 * 1 2 3 18 18 H 1.08999 * 109.46892 * 60.00628 * 9 7 2 19 19 H 1.08995 * 109.47696 * 300.00492 * 9 7 2 20 20 H 1.00896 * 110.99690 * 56.04887 * 10 9 7 21 21 H 1.08999 * 109.47322 * 60.00133 * 11 10 9 22 22 H 1.09003 * 109.47232 * 299.99766 * 11 10 9 23 23 H 1.07997 * 122.54292 * 359.71157 * 13 12 11 24 24 H 1.08003 * 125.20243 * 179.97438 * 14 13 12 25 25 H 1.08000 * 125.20529 * 0.06732 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2054 -3.6158 0.0027 11 6 1.5050 -4.9071 0.0032 12 6 2.5145 -6.0260 0.0049 13 6 3.0124 -6.5779 1.1727 14 6 3.8978 -7.5601 0.9973 15 16 4.1436 -7.8323 -0.7229 16 6 2.9955 -6.5600 -1.1188 17 1 -0.4850 0.8401 -0.0004 18 1 0.6240 -2.5575 -0.8881 19 1 0.6245 -2.5563 0.8918 20 1 2.8402 -3.5481 0.7840 21 1 0.8804 -4.9821 -0.8869 22 1 0.8798 -4.9810 0.8931 23 1 2.7103 -6.2362 2.1516 24 1 4.3891 -8.1042 1.7904 25 1 2.7227 -6.2568 -2.1187 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020199463.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:26 Heat of formation + Delta-G solvation = 27.435385 kcal Electronic energy + Delta-G solvation = -9860.928851 eV Core-core repulsion = 7965.855825 eV Total energy + Delta-G solvation = -1895.073026 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.16487 -34.75250 -32.35361 -29.68574 -27.22142 -24.71787 -22.40979 -21.35560 -18.54475 -17.36556 -16.40205 -15.28278 -14.58955 -14.11717 -13.54615 -13.13388 -12.70130 -12.36072 -12.26960 -11.82752 -11.26596 -11.11058 -10.81091 -10.68328 -10.48185 -9.93785 -9.18859 -8.60338 -8.48990 -8.21373 -7.28804 -6.03400 -4.05236 1.21122 1.84435 2.15173 2.93640 3.31366 3.38562 3.44204 4.44071 5.06678 5.32055 5.32658 5.54024 5.64363 5.74433 5.93848 6.18881 6.26580 6.63746 6.77949 7.23485 7.40957 7.78576 8.11863 8.38964 8.60171 9.04354 9.59744 11.07776 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.078516 B = 0.006400 C = 0.006257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.531282 B = 4374.017797 C = 4473.634918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.192 3.808 10 N -0.684 5.684 11 C 0.114 3.886 12 C -0.092 4.092 13 C -0.124 4.124 14 C -0.218 4.218 15 S 0.064 5.936 16 C -0.188 4.188 17 H 0.261 0.739 18 H 0.029 0.971 19 H -0.013 1.013 20 H 0.330 0.670 21 H 0.073 0.927 22 H 0.029 0.971 23 H 0.137 0.863 24 H 0.160 0.840 25 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.610 -13.698 0.851 14.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.315 5.315 11 C -0.018 4.018 12 C -0.104 4.104 13 C -0.155 4.155 14 C -0.353 4.353 15 S 0.327 5.673 16 C -0.324 4.324 17 H 0.070 0.930 18 H 0.047 0.953 19 H 0.005 0.995 20 H 0.146 0.854 21 H 0.091 0.909 22 H 0.047 0.953 23 H 0.155 0.845 24 H 0.177 0.823 25 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 6.433 -14.561 -0.688 15.934 hybrid contribution -0.805 1.873 1.742 2.681 sum 5.628 -12.688 1.054 13.920 Atomic orbital electron populations 1.69972 1.06088 1.26695 1.51023 1.24994 0.94888 0.99397 0.95345 0.86418 0.80087 0.83276 0.77498 1.19630 1.20988 1.21086 1.21225 0.93591 0.90175 1.50188 0.91878 1.19595 0.90625 0.87326 0.95875 1.60720 1.21060 1.00571 1.49105 1.20587 0.92690 0.87969 1.00552 1.19097 1.00690 0.98876 0.91760 1.20175 0.98511 0.97214 0.99582 1.25463 1.06019 1.05165 0.98657 1.84065 1.44538 1.37450 1.01261 1.25439 1.02878 1.01380 1.02730 0.92958 0.95311 0.99502 0.85365 0.90905 0.95302 0.84486 0.82259 0.81846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.00 13.29 55.43 0.74 -26.26 15 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 15 3 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 15 4 H -0.27 -6.49 7.11 56.52 0.40 -6.08 15 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 7 C -0.51 -14.73 9.32 -34.44 -0.32 -15.05 15 8 H 0.06 1.79 7.81 -52.48 -0.41 1.38 15 9 C 0.19 5.10 5.44 -4.98 -0.03 5.08 15 10 N -0.68 -15.05 6.48 -116.34 -0.75 -15.80 15 11 C 0.11 2.08 5.94 -4.97 -0.03 2.05 15 12 C -0.09 -1.46 5.31 -106.25 -0.56 -2.02 15 13 C -0.12 -1.74 9.98 -41.21 -0.41 -2.15 15 14 C -0.22 -2.69 11.23 29.04 0.33 -2.36 15 15 S 0.06 0.80 23.34 -107.50 -2.51 -1.71 15 16 C -0.19 -2.76 10.98 29.04 0.32 -2.44 15 17 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 18 H 0.03 0.82 8.14 -51.93 -0.42 0.39 15 19 H -0.01 -0.36 8.14 -51.93 -0.42 -0.78 15 20 H 0.33 7.03 8.71 -39.29 -0.34 6.68 15 21 H 0.07 1.33 8.12 -51.93 -0.42 0.90 15 22 H 0.03 0.52 8.13 -51.93 -0.42 0.10 15 23 H 0.14 1.75 8.06 -52.49 -0.42 1.33 15 24 H 0.16 1.53 8.06 -52.48 -0.42 1.11 15 25 H 0.16 2.25 8.06 -52.49 -0.42 1.83 15 LS Contribution 239.16 15.07 3.60 3.60 Total: -1.00 -30.11 239.16 -7.59 -37.71 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -2.85 Total: 1.05 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -0.81 Total: -15.41 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: -0.02 Total: -42.07 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.51 Total: -1.71 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -30.11 -7.59 -37.71 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199463.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.143 kcal (2) G-P(sol) polarization free energy of solvation -30.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds