Wall clock time and date at job start Sun Mar 29 2020 21:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86791 * 119.99981 * 2 1 4 4 H 1.48501 * 109.47209 * 269.99657 * 3 2 1 5 5 H 1.48498 * 109.47623 * 29.99612 * 3 2 1 6 6 H 1.48497 * 109.47456 * 149.99782 * 3 2 1 7 7 C 1.37875 * 119.99561 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00310 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99731 * 180.02562 * 7 2 1 10 10 N 1.46897 * 109.47334 * 180.02562 * 9 7 2 11 11 C 1.46900 * 111.00162 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47188 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.81072 * 305.52380 * 12 11 10 14 14 C 1.53022 * 109.64574 * 66.05254 * 12 11 10 15 15 C 1.50070 * 110.14859 * 169.12298 * 14 12 11 16 16 C 1.29444 * 124.07290 * 342.87281 * 15 14 12 17 17 C 1.50069 * 124.07734 * 0.46469 * 16 15 14 18 18 C 1.53020 * 110.14686 * 342.87071 * 17 16 15 19 19 H 0.97002 * 120.00247 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.46990 * 59.99854 * 9 7 2 21 21 H 1.09001 * 109.47002 * 300.00207 * 9 7 2 22 22 H 1.00902 * 110.99671 * 56.04316 * 10 9 7 23 23 H 1.08997 * 109.46955 * 60.00079 * 11 10 9 24 24 H 1.09006 * 109.46964 * 299.99972 * 11 10 9 25 25 H 1.08995 * 109.36026 * 289.32814 * 14 12 11 26 26 H 1.08996 * 109.35863 * 48.91676 * 14 12 11 27 27 H 1.08001 * 117.96413 * 162.84552 * 15 14 12 28 28 H 1.07997 * 117.96092 * 180.44789 * 16 15 14 29 29 H 1.09003 * 109.35854 * 222.66652 * 17 16 15 30 30 H 1.08998 * 109.24890 * 103.00770 * 17 16 15 31 31 H 1.08998 * 109.64736 * 289.75406 * 18 17 16 32 32 H 1.09006 * 109.64414 * 169.11906 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0011 -2.5791 0.0010 11 6 5.4696 -2.6183 0.0009 12 6 5.9409 -4.0739 0.0002 13 1 5.4879 -4.6093 0.8345 14 6 5.5429 -4.7428 -1.3173 15 6 6.2206 -6.0756 -1.4457 16 6 7.2464 -6.4382 -0.7443 17 6 7.8951 -5.5803 0.3022 18 6 7.4690 -4.1212 0.1261 19 1 -0.4850 0.8400 0.0004 20 1 3.8745 -0.6801 0.8911 21 1 3.8752 -0.6805 -0.8888 22 1 3.6259 -3.0952 -0.7806 23 1 5.8465 -2.1144 0.8909 24 1 5.8465 -2.1143 -0.8891 25 1 4.4623 -4.8835 -1.3390 26 1 5.8390 -4.1052 -2.1502 27 1 5.8278 -6.7760 -2.1679 28 1 7.6610 -7.4192 -0.9233 29 1 8.9787 -5.6539 0.2090 30 1 7.5930 -5.9282 1.2900 31 1 7.9237 -3.7130 -0.7765 32 1 7.7833 -3.5404 0.9933 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020200059.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:07 Heat of formation + Delta-G solvation = -5.557378 kcal Electronic energy + Delta-G solvation = -12042.549651 eV Core-core repulsion = 10002.270748 eV Total energy + Delta-G solvation = -2040.278903 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.73399 -35.29500 -32.61812 -31.11081 -30.56834 -27.29597 -24.43627 -22.81232 -20.97322 -20.58088 -17.83176 -16.80501 -15.97524 -14.96764 -14.31141 -14.12945 -13.92952 -13.22869 -13.00666 -12.80683 -12.33937 -12.23966 -12.17278 -11.54306 -11.22733 -10.80253 -10.70309 -10.43953 -10.14981 -9.92467 -9.70113 -9.24586 -8.93638 -8.58602 -7.44112 -6.04615 -4.02378 2.33467 3.29260 3.36714 3.39988 4.43310 4.72985 4.83930 4.88269 5.27193 5.30702 5.34551 5.37919 5.52154 5.65683 5.70738 5.89541 5.90951 6.01974 6.10517 6.16294 6.23852 6.39867 6.62706 6.72019 6.82602 6.99990 7.04171 7.63781 7.93067 8.37742 8.67561 9.03501 9.57567 11.08781 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.072628 B = 0.006838 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.434847 B = 4093.850887 C = 4332.887762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.516 4.516 8 H 0.079 0.921 9 C 0.163 3.837 10 N -0.681 5.681 11 C 0.061 3.939 12 C -0.085 4.085 13 H 0.080 0.920 14 C -0.092 4.092 15 C -0.146 4.146 16 C -0.166 4.166 17 C -0.088 4.088 18 C -0.115 4.115 19 H 0.264 0.736 20 H 0.026 0.974 21 H -0.022 1.022 22 H 0.334 0.666 23 H 0.064 0.936 24 H 0.018 0.982 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.062 -8.817 -1.655 17.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.554 4.554 8 H 0.097 0.903 9 C 0.035 3.965 10 N -0.312 5.312 11 C -0.069 4.069 12 C -0.103 4.103 13 H 0.099 0.901 14 C -0.129 4.129 15 C -0.164 4.164 16 C -0.184 4.184 17 C -0.125 4.125 18 C -0.153 4.153 19 H 0.073 0.927 20 H 0.044 0.956 21 H -0.004 1.004 22 H 0.152 0.848 23 H 0.082 0.918 24 H 0.036 0.964 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.844 -8.754 -0.967 17.260 hybrid contribution 0.532 1.128 -0.998 1.597 sum 15.376 -7.626 -1.965 17.275 Atomic orbital electron populations 1.69904 1.06159 1.26862 1.51084 1.24913 0.94758 0.98968 0.94747 0.86806 0.80333 0.83823 0.78427 1.20367 1.21140 1.19184 1.21085 0.89015 0.94809 1.50496 0.90313 1.20007 0.96599 0.85195 0.94686 1.60514 1.04666 1.16576 1.49419 1.21985 0.90573 0.94682 0.99629 1.21239 0.94663 0.96398 0.98046 0.90117 1.20560 1.00637 0.93877 0.97786 1.22117 0.96836 0.97905 0.99505 1.22006 0.98051 0.99652 0.98732 1.20422 0.99464 0.94639 0.98001 1.21633 0.95997 0.95876 1.01777 0.92665 0.95620 1.00405 0.84830 0.91760 0.96426 0.90336 0.91197 0.88297 0.88479 0.91554 0.91034 0.92073 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 7 C -0.52 -15.07 9.87 -34.44 -0.34 -15.41 16 8 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 9 C 0.16 4.07 4.51 -4.98 -0.02 4.05 16 10 N -0.68 -14.44 6.49 -115.06 -0.75 -15.19 16 11 C 0.06 1.05 5.14 -3.83 -0.02 1.03 16 12 C -0.08 -1.20 2.45 -90.40 -0.22 -1.42 16 13 H 0.08 1.23 8.12 -51.93 -0.42 0.81 16 14 C -0.09 -1.22 4.97 -28.18 -0.14 -1.36 16 15 C -0.15 -1.73 9.80 -35.90 -0.35 -2.08 16 16 C -0.17 -1.84 9.80 -35.90 -0.35 -2.19 16 17 C -0.09 -0.93 6.11 -28.18 -0.17 -1.10 16 18 C -0.11 -1.36 5.31 -26.52 -0.14 -1.50 16 19 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 20 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 21 H -0.02 -0.54 7.57 -51.93 -0.39 -0.93 16 22 H 0.33 6.81 7.29 -39.29 -0.29 6.53 16 23 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.02 0.30 8.09 -51.93 -0.42 -0.12 16 25 H 0.08 1.10 7.21 -51.93 -0.37 0.73 16 26 H 0.07 0.93 8.06 -51.93 -0.42 0.51 16 27 H 0.10 1.05 8.06 -52.49 -0.42 0.63 16 28 H 0.10 0.92 8.06 -52.49 -0.42 0.50 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 258.83 15.07 3.90 3.90 Total: -1.00 -30.56 258.83 -7.84 -38.39 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -5.24 Total: 0.99 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -1.86 Total: -18.09 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: 0.03 Total: -42.46 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.56 -7.84 -38.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020200059.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.836 kcal (2) G-P(sol) polarization free energy of solvation -30.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds