Wall clock time and date at job start Sun Mar 29 2020 21:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86791 * 119.99981 * 2 1 4 4 H 1.48501 * 109.47209 * 269.99657 * 3 2 1 5 5 H 1.48498 * 109.47623 * 29.99612 * 3 2 1 6 6 H 1.48497 * 109.47456 * 149.99782 * 3 2 1 7 7 C 1.37875 * 119.99561 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00310 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99731 * 180.02562 * 7 2 1 10 10 N 1.46897 * 109.47334 * 180.02562 * 9 7 2 11 11 C 1.46900 * 111.00162 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47188 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.81072 * 305.52380 * 12 11 10 14 14 C 1.53022 * 109.64574 * 66.05254 * 12 11 10 15 15 C 1.50070 * 110.14859 * 169.12298 * 14 12 11 16 16 C 1.29444 * 124.07290 * 342.87281 * 15 14 12 17 17 C 1.50069 * 124.07734 * 0.46469 * 16 15 14 18 18 C 1.53020 * 110.14686 * 342.87071 * 17 16 15 19 19 H 0.97002 * 120.00247 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.46990 * 59.99854 * 9 7 2 21 21 H 1.09001 * 109.47002 * 300.00207 * 9 7 2 22 22 H 1.00902 * 110.99671 * 56.04316 * 10 9 7 23 23 H 1.08997 * 109.46955 * 60.00079 * 11 10 9 24 24 H 1.09006 * 109.46964 * 299.99972 * 11 10 9 25 25 H 1.08995 * 109.36026 * 289.32814 * 14 12 11 26 26 H 1.08996 * 109.35863 * 48.91676 * 14 12 11 27 27 H 1.08001 * 117.96413 * 162.84552 * 15 14 12 28 28 H 1.07997 * 117.96092 * 180.44789 * 16 15 14 29 29 H 1.09003 * 109.35854 * 222.66652 * 17 16 15 30 30 H 1.08998 * 109.24890 * 103.00770 * 17 16 15 31 31 H 1.08998 * 109.64736 * 289.75406 * 18 17 16 32 32 H 1.09006 * 109.64414 * 169.11906 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0011 -2.5791 0.0010 11 6 5.4696 -2.6183 0.0009 12 6 5.9409 -4.0739 0.0002 13 1 5.4879 -4.6093 0.8345 14 6 5.5429 -4.7428 -1.3173 15 6 6.2206 -6.0756 -1.4457 16 6 7.2464 -6.4382 -0.7443 17 6 7.8951 -5.5803 0.3022 18 6 7.4690 -4.1212 0.1261 19 1 -0.4850 0.8400 0.0004 20 1 3.8745 -0.6801 0.8911 21 1 3.8752 -0.6805 -0.8888 22 1 3.6259 -3.0952 -0.7806 23 1 5.8465 -2.1144 0.8909 24 1 5.8465 -2.1143 -0.8891 25 1 4.4623 -4.8835 -1.3390 26 1 5.8390 -4.1052 -2.1502 27 1 5.8278 -6.7760 -2.1679 28 1 7.6610 -7.4192 -0.9233 29 1 8.9787 -5.6539 0.2090 30 1 7.5930 -5.9282 1.2900 31 1 7.9237 -3.7130 -0.7765 32 1 7.7833 -3.5404 0.9933 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020200059.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:07 Heat of formation + Delta-G solvation = -25.538075 kcal Electronic energy + Delta-G solvation = -12043.416079 eV Core-core repulsion = 10002.270748 eV Total energy + Delta-G solvation = -2041.145331 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.79586 -36.89904 -34.65418 -32.47249 -31.58795 -29.12135 -25.84148 -23.97621 -22.82565 -21.77055 -18.99365 -18.77943 -17.12600 -16.52275 -16.10548 -15.59469 -15.07836 -14.66691 -14.38846 -14.12940 -14.03215 -13.67093 -13.16382 -12.95642 -12.78143 -12.41555 -12.30067 -11.84389 -11.59826 -11.56010 -11.13225 -10.93222 -10.83141 -9.82684 -9.15434 -8.31756 -6.36701 1.33522 1.35953 1.45775 1.47509 2.33074 3.02040 3.47777 3.81379 3.85490 4.11149 4.29280 4.43782 4.51738 4.57482 4.73440 4.74335 4.78804 4.86161 4.96880 5.05507 5.09404 5.11306 5.21431 5.36283 5.49380 5.55055 5.82973 5.95542 6.11239 6.55184 6.64945 6.75700 7.28582 8.85137 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.072628 B = 0.006838 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.434847 B = 4093.850887 C = 4332.887762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.251 1.251 7 C -0.531 4.531 8 H 0.036 0.964 9 C 0.173 3.827 10 N -0.692 5.692 11 C 0.062 3.938 12 C -0.079 4.079 13 H 0.067 0.933 14 C -0.091 4.091 15 C -0.165 4.165 16 C -0.160 4.160 17 C -0.090 4.090 18 C -0.111 4.111 19 H 0.268 0.732 20 H 0.025 0.975 21 H -0.015 1.015 22 H 0.336 0.664 23 H 0.065 0.935 24 H 0.025 0.975 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.109 0.891 28 H 0.117 0.883 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.605 -8.505 -1.687 19.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.190 4.190 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.175 1.175 7 C -0.570 4.570 8 H 0.054 0.946 9 C 0.045 3.955 10 N -0.323 5.323 11 C -0.067 4.067 12 C -0.098 4.098 13 H 0.085 0.915 14 C -0.128 4.128 15 C -0.183 4.183 16 C -0.178 4.178 17 C -0.126 4.126 18 C -0.149 4.149 19 H 0.077 0.923 20 H 0.043 0.957 21 H 0.003 0.997 22 H 0.154 0.846 23 H 0.084 0.916 24 H 0.043 0.957 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.127 0.873 28 H 0.135 0.865 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 17.406 -8.467 -1.001 19.382 hybrid contribution -0.297 0.927 -0.975 1.378 sum 17.109 -7.540 -1.976 18.801 Atomic orbital electron populations 1.70057 1.08189 1.28308 1.52209 1.25908 0.95680 1.03395 0.94017 0.85622 0.79302 0.78196 0.79230 1.19024 1.20425 1.17474 1.21361 0.91445 0.93480 1.50677 0.94563 1.19763 0.93706 0.87383 0.94678 1.60423 1.07511 1.14497 1.49827 1.22086 0.87740 0.96981 0.99908 1.21155 0.96532 0.94119 0.97957 0.91458 1.20500 0.99920 0.95011 0.97334 1.22124 0.97717 0.97447 1.00974 1.22272 0.97245 1.00427 0.97814 1.20485 1.00769 0.93375 0.98018 1.21615 0.93702 0.97254 1.02343 0.92275 0.95719 0.99748 0.84640 0.91648 0.95721 0.91929 0.91268 0.87327 0.86532 0.89365 0.90613 0.91675 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.13 13.96 21.45 0.30 -59.83 16 2 C 0.01 0.45 5.47 84.65 0.46 0.91 16 3 Si 0.95 44.74 27.47 68.60 1.88 46.62 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 7 C -0.53 -31.74 9.87 25.60 0.25 -31.49 16 8 H 0.04 2.40 8.06 -2.91 -0.02 2.37 16 9 C 0.17 8.58 4.51 85.56 0.39 8.96 16 10 N -0.69 -29.34 6.49 -517.93 -3.36 -32.70 16 11 C 0.06 2.05 5.14 86.30 0.44 2.50 16 12 C -0.08 -2.14 2.45 -10.65 -0.03 -2.16 16 13 H 0.07 2.01 8.12 -2.39 -0.02 1.99 16 14 C -0.09 -2.36 4.97 29.66 0.15 -2.21 16 15 C -0.16 -3.65 9.80 27.04 0.27 -3.39 16 16 C -0.16 -3.10 9.80 27.04 0.27 -2.83 16 17 C -0.09 -1.61 6.11 29.66 0.18 -1.43 16 18 C -0.11 -2.35 5.31 30.73 0.16 -2.19 16 19 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 20 H 0.02 1.23 7.20 -2.39 -0.02 1.21 16 21 H -0.02 -0.72 7.57 -2.39 -0.02 -0.74 16 22 H 0.34 13.96 7.29 -89.69 -0.65 13.31 16 23 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 24 H 0.02 0.79 8.09 -2.38 -0.02 0.77 16 25 H 0.06 1.79 7.21 -2.39 -0.02 1.77 16 26 H 0.07 1.77 8.06 -2.39 -0.02 1.76 16 27 H 0.11 2.16 8.06 -2.91 -0.02 2.13 16 28 H 0.12 1.82 8.06 -2.91 -0.02 1.80 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 31 H 0.06 1.34 8.12 -2.39 -0.02 1.32 16 32 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 Total: -1.00 -65.74 258.83 1.73 -64.02 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.36 Total: 15.22 kcal Atomic # 6 Polarization: -35.87 SS G_CDS: 2.54 Total: -33.33 kcal Atomic # 7 Polarization: -89.47 SS G_CDS: -3.06 Total: -92.53 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.88 Total: 46.62 kcal Total: -65.74 1.73 -64.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020200059.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.478 kcal (2) G-P(sol) polarization free energy of solvation -65.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds