Wall clock time and date at job start Sun Mar 29 2020 21:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.47364 * 179.72223 * 3 2 1 5 5 H 1.48508 * 109.46883 * 299.72346 * 3 2 1 6 6 H 1.48497 * 109.46870 * 59.72156 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 N 1.46905 * 109.46934 * 180.02562 * 9 7 2 11 11 C 1.46905 * 111.00163 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47234 * 179.97438 * 11 10 9 13 13 H 1.08994 * 109.64031 * 54.57791 * 12 11 10 14 14 C 1.53028 * 109.63911 * 293.94623 * 12 11 10 15 15 C 1.50076 * 110.14381 * 190.88067 * 14 12 11 16 16 C 1.29446 * 124.07212 * 17.12676 * 15 14 12 17 17 C 1.50057 * 124.07833 * 359.53531 * 16 15 14 18 18 C 1.53029 * 110.14985 * 17.12805 * 17 16 15 19 19 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 21 21 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 22 22 H 1.00891 * 111.00204 * 56.04404 * 10 9 7 23 23 H 1.08991 * 109.46751 * 299.99997 * 11 10 9 24 24 H 1.09001 * 109.46854 * 59.99746 * 11 10 9 25 25 H 1.09000 * 109.35718 * 311.08491 * 14 12 11 26 26 H 1.08995 * 109.35920 * 70.67438 * 14 12 11 27 27 H 1.07995 * 117.96058 * 197.15595 * 15 14 12 28 28 H 1.07999 * 117.95413 * 179.55624 * 16 15 14 29 29 H 1.09003 * 109.36292 * 256.92069 * 17 16 15 30 30 H 1.08999 * 109.36303 * 137.33577 * 17 16 15 31 31 H 1.09006 * 109.64101 * 190.87834 * 18 17 16 32 32 H 1.08995 * 109.81391 * 70.35214 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0068 5 1 1.8957 2.3934 -1.2159 6 1 1.8855 2.3993 1.2091 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 7 2.2054 -3.6158 0.0131 11 6 1.5050 -4.9071 0.0139 12 6 2.5298 -6.0432 0.0209 13 1 3.2138 -5.9144 0.8597 14 6 3.3137 -6.0368 -1.2933 15 6 4.1295 -7.2906 -1.4146 16 6 3.9275 -8.3582 -0.7109 17 6 2.8558 -8.4878 0.3314 18 6 1.8061 -7.3896 0.1477 19 1 -0.4851 -0.8400 -0.0004 20 1 0.6205 -2.5547 0.8933 21 1 0.6280 -2.5591 -0.8867 22 1 2.8367 -3.5467 0.7971 23 1 0.8764 -4.9789 0.9014 24 1 0.8838 -4.9841 -0.8785 25 1 2.6169 -5.9769 -2.1293 26 1 3.9760 -5.1714 -1.3148 27 1 4.9355 -7.3028 -2.1333 28 1 4.5705 -9.2083 -0.8846 29 1 3.3023 -8.3988 1.3218 30 1 2.3781 -9.4632 0.2392 31 1 1.1423 -7.3689 1.0121 32 1 1.2260 -7.5803 -0.7552 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020200061.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:09 Heat of formation + Delta-G solvation = -13.676767 kcal Electronic energy + Delta-G solvation = -12025.697825 eV Core-core repulsion = 9985.066839 eV Total energy + Delta-G solvation = -2040.630986 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.65544 -35.31595 -32.87044 -30.93567 -30.43415 -26.45142 -24.04916 -22.83506 -21.60504 -20.62637 -17.77024 -16.87363 -15.84764 -14.64996 -14.33339 -14.20299 -13.70629 -13.27392 -13.08414 -12.54556 -12.37694 -12.19088 -11.53647 -11.46773 -11.27986 -10.73880 -10.59043 -10.44747 -10.13326 -10.06137 -9.92503 -8.88034 -8.60183 -8.39332 -7.36771 -6.36523 -4.05198 2.38041 3.45581 3.49880 3.63941 4.53804 4.76775 4.86118 4.93798 5.27601 5.40555 5.41384 5.46195 5.58629 5.67841 5.73906 5.92085 6.00398 6.10475 6.13080 6.22564 6.28268 6.49031 6.65519 6.76653 6.97328 7.07083 7.18080 7.81103 8.17929 8.49106 8.60529 8.88909 9.66901 11.03465 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.076164 B = 0.006413 C = 0.006090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.540593 B = 4365.040609 C = 4596.318664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 1.079 2.921 4 H -0.288 1.288 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.594 4.594 8 H 0.057 0.943 9 C 0.183 3.817 10 N -0.682 5.682 11 C 0.062 3.938 12 C -0.082 4.082 13 H 0.067 0.933 14 C -0.079 4.079 15 C -0.145 4.145 16 C -0.172 4.172 17 C -0.087 4.087 18 C -0.116 4.116 19 H 0.267 0.733 20 H -0.025 1.025 21 H 0.017 0.983 22 H 0.330 0.670 23 H 0.017 0.983 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.598 -14.501 -0.065 15.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.190 4.190 3 Si 0.908 3.092 4 H -0.214 1.214 5 H -0.213 1.213 6 H -0.214 1.214 7 C -0.633 4.633 8 H 0.075 0.925 9 C 0.055 3.945 10 N -0.312 5.312 11 C -0.068 4.068 12 C -0.101 4.101 13 H 0.086 0.914 14 C -0.116 4.116 15 C -0.163 4.163 16 C -0.190 4.190 17 C -0.124 4.124 18 C -0.154 4.154 19 H 0.077 0.923 20 H -0.008 1.008 21 H 0.035 0.965 22 H 0.146 0.854 23 H 0.035 0.965 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.116 0.884 28 H 0.114 0.886 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.490 -12.843 -0.760 13.988 hybrid contribution -0.143 -1.800 0.847 1.994 sum 5.347 -14.642 0.086 15.588 Atomic orbital electron populations 1.70730 1.06916 1.30477 1.47120 1.25883 0.96502 1.02805 0.93833 0.83404 0.74430 0.74531 0.76885 1.21442 1.21324 1.21433 1.22073 0.94873 0.91274 1.55079 0.92505 1.19660 0.91268 0.89115 0.94411 1.60557 1.20956 1.00951 1.48717 1.21980 0.95077 0.90210 0.99554 1.21197 0.97099 0.93682 0.98120 0.91445 1.20404 0.98294 0.95539 0.97321 1.22263 0.99445 0.95456 0.99113 1.21971 0.99839 0.98076 0.99120 1.20396 0.95291 0.98782 0.97903 1.21641 0.97408 0.94521 1.01806 0.92255 1.00786 0.96463 0.85398 0.96523 0.91923 0.91030 0.89842 0.88389 0.88599 0.91294 0.91590 0.91961 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.52 13.65 55.43 0.76 -27.77 16 2 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 3 Si 1.08 25.82 29.90 -169.99 -5.08 20.73 16 4 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.59 -17.38 9.32 -34.44 -0.32 -17.70 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.18 4.89 4.75 -4.97 -0.02 4.87 16 10 N -0.68 -14.99 6.20 -115.06 -0.71 -15.70 16 11 C 0.06 1.12 5.08 -3.82 -0.02 1.10 16 12 C -0.08 -1.21 2.38 -90.41 -0.22 -1.43 16 13 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 14 C -0.08 -1.15 5.23 -28.17 -0.15 -1.30 16 15 C -0.14 -1.83 9.80 -35.90 -0.35 -2.18 16 16 C -0.17 -1.99 9.80 -35.91 -0.35 -2.35 16 17 C -0.09 -0.95 6.12 -28.18 -0.17 -1.13 16 18 C -0.12 -1.44 5.30 -26.52 -0.14 -1.58 16 19 H 0.27 8.32 7.22 -40.82 -0.29 8.02 16 20 H -0.03 -0.71 8.00 -51.93 -0.42 -1.13 16 21 H 0.02 0.49 8.01 -51.93 -0.42 0.08 16 22 H 0.33 7.01 8.72 -39.30 -0.34 6.67 16 23 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.06 1.16 8.09 -51.93 -0.42 0.74 16 25 H 0.07 1.08 8.06 -51.93 -0.42 0.66 16 26 H 0.08 1.34 8.08 -51.93 -0.42 0.92 16 27 H 0.10 1.11 8.06 -52.49 -0.42 0.69 16 28 H 0.10 0.96 8.06 -52.49 -0.42 0.54 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 LS Contribution 263.25 15.07 3.97 3.97 Total: -1.00 -30.64 263.25 -8.23 -38.87 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -5.31 Total: 1.31 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -1.84 Total: -21.40 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: 0.04 Total: -43.47 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -5.08 Total: 20.73 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.64 -8.23 -38.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020200061.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.189 kcal (2) G-P(sol) polarization free energy of solvation -30.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds