Wall clock time and date at job start Sun Mar 29 2020 21:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.34227 * 125.74271 * 125.00123 * 10 9 7 12 12 C 1.38122 * 107.41043 * 179.97438 * 11 10 9 13 13 C 1.47288 * 126.42760 * 179.97438 * 12 11 10 14 14 O 1.21526 * 119.99905 * 359.97438 * 13 12 11 15 15 O 1.34755 * 120.00203 * 179.97438 * 13 12 11 16 16 C 1.41340 * 107.14572 * 359.97438 * 12 11 10 17 17 N 1.30431 * 108.01164 * 359.74720 * 16 12 11 18 18 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 20 20 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 21 21 H 1.08001 * 126.29201 * 359.95151 * 11 10 9 22 22 H 0.96695 * 117.00368 * 180.02562 * 15 13 12 23 23 H 1.08001 * 125.99639 * 180.02562 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.2374 -4.6147 0.8929 12 6 3.2785 -5.4497 0.5367 13 6 3.6898 -6.6807 1.2331 14 8 3.0909 -7.0466 2.2251 15 8 4.7303 -7.4011 0.7701 16 6 3.8749 -4.9013 -0.6213 17 7 3.2249 -3.8145 -0.9337 18 1 -0.4850 0.8401 0.0004 19 1 0.6239 -2.5567 0.8903 20 1 0.6246 -2.5571 -0.8897 21 1 1.5735 -4.7441 1.7349 22 1 4.9628 -8.2015 1.2603 23 1 4.7180 -5.3125 -1.1566 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020397338.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:15 Heat of formation + Delta-G solvation = -26.086257 kcal Electronic energy + Delta-G solvation = -11594.307777 eV Core-core repulsion = 9216.046575 eV Total energy + Delta-G solvation = -2378.261202 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 196.063 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.78767 -39.25808 -35.69475 -33.85786 -31.83397 -29.92799 -27.54216 -24.01924 -22.86962 -20.41177 -19.90753 -17.65794 -16.99647 -16.60468 -15.31012 -15.15223 -14.58788 -14.17578 -13.51021 -13.10106 -12.43597 -12.32211 -11.86681 -11.29747 -11.10398 -10.99348 -10.71373 -10.37626 -9.96124 -9.76128 -8.93523 -8.72597 -8.16279 -6.36165 -4.42097 1.86106 2.70352 3.08874 3.17237 3.25193 3.32401 3.63213 3.65080 4.23243 4.99860 5.23869 5.30951 5.60069 5.85441 6.23899 6.63062 6.75010 6.83860 7.04392 7.49114 7.69447 7.71071 8.22257 8.33076 8.65445 9.24602 10.73191 Molecular weight = 196.06amu Principal moments of inertia in cm(-1) A = 0.072381 B = 0.007771 C = 0.007497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.750651 B = 3602.254585 C = 3733.699817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.064 3.936 3 Si 0.911 3.089 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.534 4.534 8 H 0.072 0.928 9 C 0.248 3.752 10 N -0.309 5.309 11 C 0.131 3.869 12 C -0.316 4.316 13 C 0.566 3.434 14 O -0.543 6.543 15 O -0.517 6.517 16 C 0.075 3.925 17 N -0.283 5.283 18 H 0.269 0.731 19 H 0.061 0.939 20 H 0.054 0.946 21 H 0.183 0.817 22 H 0.406 0.594 23 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.356 -8.916 0.905 10.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.738 3.262 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.572 4.572 8 H 0.090 0.910 9 C 0.132 3.868 10 N -0.083 5.083 11 C -0.026 4.026 12 C -0.329 4.329 13 C 0.413 3.587 14 O -0.434 6.434 15 O -0.328 6.328 16 C -0.112 4.112 17 N -0.103 5.103 18 H 0.078 0.922 19 H 0.079 0.921 20 H 0.071 0.929 21 H 0.200 0.800 22 H 0.263 0.737 23 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 4.717 -7.368 0.082 8.749 hybrid contribution 0.537 -0.315 0.951 1.136 sum 5.254 -7.683 1.032 9.365 Atomic orbital electron populations 1.69919 1.06095 1.27825 1.49191 1.24952 0.95031 0.99711 0.94284 0.86217 0.80041 0.82118 0.77831 1.19452 1.20558 1.20655 1.21226 0.94096 0.89040 1.52877 0.91013 1.19993 0.85701 0.81131 0.99992 1.49558 1.23198 1.18521 1.17064 1.22957 0.96936 0.87877 0.94831 1.19086 1.07201 1.01133 1.05527 1.19834 0.76083 0.82014 0.80794 1.90842 1.55036 1.70776 1.26794 1.84579 1.49234 1.40250 1.58749 1.24048 0.99307 0.92857 0.95010 1.77299 1.01275 1.17765 1.14001 0.92166 0.92132 0.92870 0.80005 0.73715 0.79730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.54 13.29 55.43 0.74 -23.80 14 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 14 3 Si 0.91 20.81 29.54 -169.99 -5.02 15.79 14 4 H -0.27 -6.19 7.11 56.52 0.40 -5.78 14 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 14 6 H -0.28 -6.30 7.11 56.52 0.40 -5.89 14 7 C -0.53 -14.32 9.23 -34.44 -0.32 -14.64 14 8 H 0.07 1.99 7.81 -52.49 -0.41 1.58 14 9 C 0.25 6.00 6.24 -5.19 -0.03 5.96 14 10 N -0.31 -6.71 3.63 -61.97 -0.23 -6.94 14 11 C 0.13 2.47 11.25 -16.55 -0.19 2.28 14 12 C -0.32 -5.62 6.13 -105.08 -0.64 -6.27 14 13 C 0.57 9.14 8.33 34.41 0.29 9.43 14 14 O -0.54 -9.97 17.69 -19.29 -0.34 -10.31 14 15 O -0.52 -6.33 13.28 -40.64 -0.54 -6.87 14 16 C 0.08 1.34 11.87 -16.97 -0.20 1.14 14 17 N -0.28 -6.09 12.32 30.87 0.38 -5.71 14 18 H 0.27 6.95 8.31 -40.82 -0.34 6.62 14 19 H 0.06 1.43 8.06 -51.93 -0.42 1.01 14 20 H 0.05 1.35 8.14 -51.93 -0.42 0.92 14 21 H 0.18 2.94 8.06 -52.49 -0.42 2.52 14 22 H 0.41 2.92 9.11 45.56 0.42 3.33 14 23 H 0.19 2.58 8.06 -52.49 -0.42 2.16 14 LS Contribution 227.12 15.07 3.42 3.42 Total: -1.00 -30.77 227.12 -3.60 -34.37 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: -0.82 Total: 0.55 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -1.19 Total: -0.48 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.89 Total: -36.45 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.88 Total: -17.19 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -30.77 -3.60 -34.37 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020397338.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.281 kcal (2) G-P(sol) polarization free energy of solvation -30.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds