Wall clock time and date at job start Sun Mar 29 2020 21:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36931 * 119.99865 * 2 1 4 4 H 1.07999 * 119.99922 * 200.37480 * 3 2 1 5 5 C 1.38813 * 119.99983 * 20.37613 * 3 2 1 6 6 N 1.31619 * 120.00327 * 14.97798 * 5 3 2 7 7 Si 1.86804 * 119.99639 * 194.97642 * 5 3 2 8 8 H 1.48496 * 109.47199 * 85.00875 * 7 5 3 9 9 H 1.48500 * 109.46951 * 205.00466 * 7 5 3 10 10 H 1.48504 * 109.47302 * 325.00206 * 7 5 3 11 11 C 1.46497 * 119.99683 * 179.97438 * 2 1 3 12 12 C 1.50701 * 109.46837 * 269.99931 * 11 2 1 13 13 C 1.33398 * 125.20334 * 90.00622 * 12 11 2 14 14 C 1.38417 * 114.91979 * 180.02562 * 13 12 11 15 15 C 1.33384 * 114.92746 * 0.25043 * 14 13 12 16 16 S 1.75885 * 125.20539 * 270.04332 * 12 11 2 17 17 H 1.08995 * 109.47330 * 275.10091 * 1 2 3 18 18 H 1.09008 * 109.46835 * 35.09903 * 1 2 3 19 19 H 1.09000 * 109.47101 * 155.09407 * 1 2 3 20 20 H 0.97000 * 119.99699 * 179.97438 * 6 5 3 21 21 H 1.09001 * 109.47100 * 150.00605 * 11 2 1 22 22 H 1.09002 * 109.47617 * 29.99954 * 11 2 1 23 23 H 1.07998 * 122.53669 * 0.05216 * 13 12 11 24 24 H 1.08001 * 122.53406 * 179.97438 * 14 13 12 25 25 H 1.07992 * 125.20833 * 179.75752 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1790 1.2151 -0.3256 5 6 1.5207 2.3504 0.4186 6 7 0.3876 2.2835 1.0849 7 14 2.2826 4.0126 0.0362 8 1 1.8683 4.4463 -1.3223 9 1 1.8226 5.0097 1.0359 10 1 3.7626 3.9032 0.0911 11 6 2.1975 -1.2687 0.0006 12 6 2.4486 -1.7031 1.4216 13 6 1.6328 -2.4698 2.1470 14 6 2.0735 -2.7383 3.4314 15 6 3.2445 -2.1855 3.7510 16 16 3.8617 -1.2760 2.3778 17 1 -0.3634 0.0914 1.0235 18 1 -0.3633 0.8409 -0.5910 19 1 -0.3633 -0.9321 -0.4328 20 1 -0.0516 3.0973 1.3776 21 1 3.1500 -1.1387 -0.5132 22 1 1.6084 -2.0287 -0.5129 23 1 0.6995 -2.8523 1.7611 24 1 1.5095 -3.3456 4.1238 25 1 3.7391 -2.2831 4.7060 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035125619.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:00 Heat of formation + Delta-G solvation = 55.958786 kcal Electronic energy + Delta-G solvation = -10431.020821 eV Core-core repulsion = 8537.184662 eV Total energy + Delta-G solvation = -1893.836159 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -37.26690 -35.32301 -31.64631 -29.21087 -26.11128 -25.39993 -22.70399 -20.90478 -18.52561 -16.69799 -16.38726 -14.89289 -14.65314 -13.68925 -13.38163 -12.82332 -12.13683 -12.02823 -11.85884 -11.37188 -10.97593 -10.88149 -10.63224 -10.36675 -10.05490 -9.95159 -9.89212 -8.59611 -7.93340 -7.72609 -6.86429 -5.77871 -3.19432 1.75839 2.43384 2.81694 3.37217 3.42722 3.44491 3.48565 4.48483 5.38120 5.60528 5.62726 5.75680 6.08501 6.24916 6.26445 6.48772 6.71808 6.83152 7.04266 7.25468 7.34081 7.69806 7.77717 8.32040 9.16738 9.79075 10.27266 11.26435 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.044045 B = 0.012228 C = 0.011038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.553877 B = 2289.300747 C = 2536.127115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.585 5.585 3 C -0.255 4.255 4 H 0.072 0.928 5 C 0.004 3.996 6 N -0.900 5.900 7 Si 0.906 3.094 8 H -0.286 1.286 9 H -0.290 1.290 10 H -0.278 1.278 11 C 0.205 3.795 12 C -0.143 4.143 13 C -0.173 4.173 14 C -0.126 4.126 15 C -0.250 4.250 16 S 0.088 5.912 17 H 0.031 0.969 18 H 0.047 0.953 19 H 0.000 1.000 20 H 0.254 0.746 21 H 0.056 0.944 22 H 0.061 0.939 23 H 0.127 0.873 24 H 0.125 0.875 25 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.404 -7.622 1.405 8.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.305 5.305 3 C -0.385 4.385 4 H 0.090 0.910 5 C -0.195 4.195 6 N -0.544 5.544 7 Si 0.736 3.264 8 H -0.213 1.213 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.075 3.925 12 C -0.265 4.265 13 C -0.204 4.204 14 C -0.157 4.157 15 C -0.386 4.386 16 S 0.350 5.650 17 H 0.049 0.951 18 H 0.065 0.935 19 H 0.019 0.981 20 H 0.064 0.936 21 H 0.074 0.926 22 H 0.079 0.921 23 H 0.145 0.855 24 H 0.143 0.857 25 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.559 -6.595 1.177 8.103 hybrid contribution -1.048 0.223 0.576 1.216 sum 3.511 -6.372 1.753 7.483 Atomic orbital electron populations 1.20854 0.82055 0.95718 0.99692 1.44286 1.02177 1.00290 1.83770 1.19257 0.97375 0.84553 1.37285 0.91040 1.25042 0.97817 0.98610 0.98038 1.70099 1.18595 1.27049 1.38625 0.86243 0.78822 0.83699 0.77652 1.21290 1.21659 1.20352 1.19647 0.96615 0.88786 0.87404 1.26247 0.96621 0.99366 1.04258 1.19880 1.01582 1.04368 0.94526 1.20015 0.96429 1.02388 0.96873 1.25361 1.02595 1.07330 1.03287 1.84131 1.23422 1.51871 1.05582 0.95082 0.93471 0.98113 0.93582 0.92617 0.92135 0.85507 0.85702 0.83264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.00 9.02 59.85 0.54 4.54 15 2 N -0.59 -14.83 2.91 -182.50 -0.53 -15.36 15 3 C -0.25 -7.00 9.68 -15.06 -0.15 -7.14 15 4 H 0.07 1.92 7.86 -52.49 -0.41 1.51 15 5 C 0.00 0.12 5.06 -17.43 -0.09 0.03 15 6 N -0.90 -26.39 10.67 55.49 0.59 -25.80 15 7 Si 0.91 21.94 29.58 -169.99 -5.03 16.91 15 8 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 9 H -0.29 -7.10 7.11 56.52 0.40 -6.70 15 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 11 C 0.20 4.32 6.20 -5.19 -0.03 4.29 15 12 C -0.14 -2.95 6.09 -36.00 -0.22 -3.17 15 13 C -0.17 -3.32 10.05 -41.21 -0.41 -3.74 15 14 C -0.13 -2.19 10.18 -41.21 -0.42 -2.61 15 15 C -0.25 -4.32 11.23 29.04 0.33 -3.99 15 16 S 0.09 1.70 23.33 -107.50 -2.51 -0.81 15 17 H 0.03 0.84 7.40 -51.93 -0.38 0.46 15 18 H 0.05 1.24 7.21 -51.92 -0.37 0.87 15 19 H 0.00 0.01 7.84 -51.93 -0.41 -0.40 15 20 H 0.25 7.22 8.31 -40.82 -0.34 6.88 15 21 H 0.06 1.13 8.03 -51.93 -0.42 0.71 15 22 H 0.06 1.14 7.86 -51.93 -0.41 0.73 15 23 H 0.13 2.26 8.06 -52.49 -0.42 1.83 15 24 H 0.13 1.82 8.06 -52.49 -0.42 1.40 15 25 H 0.15 2.14 8.06 -52.49 -0.42 1.72 15 LS Contribution 233.99 15.07 3.53 3.53 Total: -1.00 -29.74 233.99 -7.21 -36.94 By element: Atomic # 1 Polarization: -0.81 SS G_CDS: -2.81 Total: -3.62 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -0.45 Total: -11.79 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.06 Total: -41.16 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.51 Total: -0.81 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -29.74 -7.21 -36.94 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035125619.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.904 kcal (2) G-P(sol) polarization free energy of solvation -29.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds