Wall clock time and date at job start Sun Mar 29 2020 22:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 120.00265 * 2 1 4 4 H 1.48500 * 109.47074 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46931 * 300.00151 * 3 2 1 6 6 H 1.48501 * 109.46950 * 59.99741 * 3 2 1 7 7 C 1.38952 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00055 * 180.02562 * 7 2 1 9 9 N 1.37100 * 120.00125 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99915 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99989 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99942 * 180.02562 * 10 9 7 13 13 C 1.52997 * 109.47078 * 59.99862 * 12 10 9 14 14 C 1.52999 * 109.47317 * 179.97438 * 13 12 10 15 15 C 1.53005 * 109.47159 * 300.00546 * 14 13 12 16 16 C 1.52997 * 109.47452 * 59.99536 * 15 14 13 17 17 C 1.53000 * 109.47083 * 179.97438 * 12 10 9 18 18 H 0.97006 * 120.00195 * 0.02562 * 1 2 3 19 19 H 0.96998 * 119.99961 * 0.02562 * 9 7 2 20 20 H 1.09002 * 109.46959 * 299.99950 * 12 10 9 21 21 H 1.08996 * 109.47853 * 300.00179 * 13 12 10 22 22 H 1.09002 * 109.47153 * 60.00207 * 13 12 10 23 23 H 1.09000 * 109.47486 * 180.02562 * 14 13 12 24 24 H 1.09002 * 109.46716 * 60.00091 * 14 13 12 25 25 H 1.09002 * 109.46935 * 299.99411 * 15 14 13 26 26 H 1.09001 * 109.46812 * 179.97438 * 15 14 13 27 27 H 1.08993 * 109.47194 * 179.97438 * 16 15 14 28 28 H 1.09002 * 109.46695 * 59.99734 * 16 15 14 29 29 H 1.08992 * 109.47399 * 299.99938 * 17 12 10 30 30 H 1.09004 * 109.46724 * 60.00424 * 17 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3233 -2.3907 0.0016 10 6 1.9971 -3.5579 0.0026 11 8 3.2101 -3.5579 0.0022 12 6 1.2436 -4.8630 0.0032 13 6 0.3645 -4.9448 -1.2463 14 6 -0.4001 -6.2701 -1.2460 15 6 0.5946 -7.4327 -1.2451 16 6 1.4737 -7.3509 0.0044 17 6 2.2379 -6.0259 0.0037 18 1 -0.4851 0.8401 -0.0004 19 1 0.3533 -2.3907 0.0016 20 1 0.6166 -4.9201 0.8930 21 1 -0.3438 -4.1164 -1.2472 22 1 0.9915 -4.8877 -2.1361 23 1 -1.0261 -6.3286 -2.1364 24 1 -1.0270 -6.3276 -0.3562 25 1 1.2215 -7.3752 -2.1349 26 1 0.0498 -8.3768 -1.2445 27 1 2.1819 -8.1793 0.0052 28 1 0.8467 -7.4084 0.8941 29 1 2.8645 -5.9686 -0.8862 30 1 2.8644 -5.9677 0.8938 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037489161.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:31 Heat of formation + Delta-G solvation = -73.750717 kcal Electronic energy + Delta-G solvation = -12668.021497 eV Core-core repulsion = 10461.640936 eV Total energy + Delta-G solvation = -2206.380561 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.03710 -36.79460 -33.91352 -31.41575 -30.37795 -30.26057 -25.12495 -22.72793 -22.13163 -19.77086 -18.77491 -17.82573 -15.93449 -15.04418 -14.43622 -14.08345 -14.01722 -13.67865 -13.37895 -12.65370 -12.12372 -11.86641 -11.83819 -11.44805 -11.10479 -10.84174 -10.80024 -10.32203 -10.29437 -10.21644 -9.98048 -9.72518 -9.48284 -8.24279 -7.92511 -6.38539 -3.79044 3.18128 3.28301 3.35901 3.96230 4.20517 4.87575 5.02249 5.05029 5.29348 5.31518 5.56434 5.65683 5.78739 5.81295 5.85986 5.91238 6.04552 6.24915 6.30197 6.36990 6.48128 6.50767 6.65845 6.77392 6.85885 7.58335 8.10592 8.65550 9.21515 9.60134 10.11888 10.79324 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.068737 B = 0.008525 C = 0.007831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.254279 B = 3283.735131 C = 3574.562913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.445 3.555 11 O -0.597 6.597 12 C -0.097 4.097 13 C -0.110 4.110 14 C -0.117 4.117 15 C -0.119 4.119 16 C -0.119 4.119 17 C -0.093 4.093 18 H 0.270 0.730 19 H 0.392 0.608 20 H 0.079 0.921 21 H 0.067 0.933 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.615 -10.247 -1.326 10.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.198 5.198 10 C 0.231 3.769 11 O -0.483 6.483 12 C -0.119 4.119 13 C -0.148 4.148 14 C -0.155 4.155 15 C -0.157 4.157 16 C -0.157 4.157 17 C -0.131 4.131 18 H 0.080 0.920 19 H 0.226 0.774 20 H 0.097 0.903 21 H 0.086 0.914 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.932 -10.065 -1.325 10.334 hybrid contribution -0.268 0.950 0.025 0.988 sum -2.201 -9.115 -1.300 9.467 Atomic orbital electron populations 1.69624 1.05922 1.27978 1.50818 1.25260 0.95627 0.99690 0.97418 0.85816 0.79715 0.81218 0.77690 1.19252 1.20761 1.20765 1.19784 0.93410 0.82430 1.47345 0.87956 1.41926 1.09220 1.04658 1.64011 1.19976 0.88146 0.84998 0.83774 1.90497 1.14122 1.87459 1.56231 1.21153 0.97345 0.94396 0.98967 1.21528 0.98314 0.97257 0.97708 1.21539 0.97619 0.94778 1.01523 1.21547 0.97812 0.97795 0.98517 1.21569 0.98517 0.97726 0.97883 1.21237 0.96937 0.92010 1.02946 0.91967 0.77395 0.90304 0.91416 0.91793 0.92234 0.92069 0.92116 0.92602 0.92346 0.92294 0.91622 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.95 13.05 55.50 0.72 -24.23 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.38 29.55 -169.99 -5.02 16.35 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.30 -8.58 9.68 -14.93 -0.14 -8.72 16 8 H 0.10 3.07 7.16 -52.49 -0.38 2.70 16 9 N -0.56 -14.72 5.18 -10.96 -0.06 -14.77 16 10 C 0.44 10.92 7.11 -10.99 -0.08 10.84 16 11 O -0.60 -16.80 15.56 5.55 0.09 -16.71 16 12 C -0.10 -1.80 2.53 -91.77 -0.23 -2.03 16 13 C -0.11 -1.80 5.10 -26.73 -0.14 -1.93 16 14 C -0.12 -1.51 5.92 -26.73 -0.16 -1.67 16 15 C -0.12 -1.44 5.92 -26.73 -0.16 -1.60 16 16 C -0.12 -1.55 5.92 -26.76 -0.16 -1.71 16 17 C -0.09 -1.57 4.49 -26.76 -0.12 -1.69 16 18 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 19 H 0.39 9.84 7.32 -40.82 -0.30 9.54 16 20 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 21 H 0.07 1.14 7.56 -51.93 -0.39 0.75 16 22 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 30 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 LS Contribution 248.52 15.07 3.75 3.75 Total: -1.00 -30.70 248.52 -6.23 -36.93 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -4.43 Total: 6.72 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -1.28 Total: -8.03 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.67 Total: -39.00 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: 0.09 Total: -16.71 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -30.70 -6.23 -36.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037489161.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.823 kcal (2) G-P(sol) polarization free energy of solvation -30.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds