Wall clock time and date at job start Sun Mar 29 2020 21:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86799 * 120.00078 * 2 1 4 4 H 1.48501 * 109.47160 * 270.00084 * 3 2 1 5 5 H 1.48500 * 109.47209 * 30.00530 * 3 2 1 6 6 H 1.48499 * 109.47065 * 150.00455 * 3 2 1 7 7 C 1.38974 * 119.99535 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00287 * 359.97438 * 7 2 1 9 9 N 1.36974 * 119.99371 * 180.02562 * 7 2 1 10 10 C 1.34775 * 119.99605 * 179.97438 * 9 7 2 11 11 O 1.21666 * 120.00449 * 359.97438 * 10 9 7 12 12 C 1.47113 * 120.00113 * 179.97438 * 10 9 7 13 13 C 1.44447 * 123.47326 * 179.97438 * 12 10 9 14 14 C 1.32754 * 113.08556 * 179.97438 * 13 12 10 15 15 S 1.75500 * 110.59662 * 359.78341 * 14 13 12 16 16 C 1.36098 * 123.47016 * 359.97438 * 12 10 9 17 17 H 0.97005 * 119.99574 * 359.97438 * 1 2 3 18 18 H 0.97003 * 120.00618 * 359.97438 * 9 7 2 19 19 H 1.08000 * 123.45442 * 0.02562 * 13 12 10 20 20 H 1.08008 * 124.70040 * 180.02562 * 14 13 12 21 21 H 1.08002 * 124.59245 * 359.97438 * 16 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4458 2.6526 0.7001 6 1 3.5458 1.4401 0.6999 7 6 2.0090 -1.2036 -0.0005 8 1 1.4690 -2.1389 -0.0005 9 7 3.3787 -1.2036 0.0000 10 6 4.0526 -2.3708 0.0000 11 8 3.4443 -3.4245 0.0000 12 6 5.5237 -2.3709 0.0000 13 6 6.3203 -3.5758 0.0005 14 6 7.6261 -3.3365 -0.0001 15 16 7.9373 -1.6094 -0.0076 16 6 6.2743 -1.2356 -0.0005 17 1 -0.4850 0.8401 0.0004 18 1 3.8638 -0.3635 0.0004 19 1 5.8970 -4.5694 0.0006 20 1 8.3910 -4.0991 -0.0003 21 1 5.8709 -0.2338 -0.0014 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037714270.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:57 Heat of formation + Delta-G solvation = -4.410483 kcal Electronic energy + Delta-G solvation = -9962.302976 eV Core-core repulsion = 7930.015915 eV Total energy + Delta-G solvation = -2032.287061 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 197.025 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.77131 -36.20117 -34.06460 -31.85426 -29.47715 -25.46529 -23.75349 -20.62369 -19.06734 -18.26926 -17.03537 -16.17707 -14.99510 -13.99200 -13.85332 -13.42706 -12.78648 -12.63226 -12.33117 -12.19394 -11.95982 -11.28798 -10.85138 -10.67086 -10.07736 -9.69498 -8.75835 -8.63965 -8.29908 -8.08028 -6.45467 -3.90147 1.14263 1.85003 2.21225 2.50337 2.96667 3.01662 3.08019 3.99382 4.22347 4.58871 5.10017 5.21777 5.48870 5.75993 5.91709 6.17192 6.41060 6.63939 7.45330 8.04641 8.48615 8.82884 9.29807 9.75739 10.66476 Molecular weight = 197.03amu Principal moments of inertia in cm(-1) A = 0.053467 B = 0.010848 C = 0.009047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.563452 B = 2580.494660 C = 3094.214053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.043 3.957 3 Si 0.879 3.121 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.268 1.268 7 C -0.299 4.299 8 H 0.124 0.876 9 N -0.570 5.570 10 C 0.495 3.505 11 O -0.579 6.579 12 C -0.114 4.114 13 C -0.084 4.084 14 C -0.238 4.238 15 S 0.135 5.865 16 C -0.241 4.241 17 H 0.277 0.723 18 H 0.371 0.629 19 H 0.152 0.848 20 H 0.164 0.836 21 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.877 1.052 -0.032 14.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.162 4.162 3 Si 0.704 3.296 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.142 0.858 9 N -0.206 5.206 10 C 0.282 3.718 11 O -0.464 6.464 12 C -0.132 4.132 13 C -0.114 4.114 14 C -0.372 4.372 15 S 0.399 5.601 16 C -0.380 4.380 17 H 0.087 0.913 18 H 0.205 0.795 19 H 0.169 0.831 20 H 0.181 0.819 21 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 15.529 1.344 -0.042 15.587 hybrid contribution -0.830 0.621 0.029 1.037 sum 14.699 1.966 -0.012 14.830 Atomic orbital electron populations 1.69625 1.05701 1.27935 1.47393 1.25104 0.95583 0.98200 0.97298 0.86672 0.79921 0.83762 0.79202 1.19234 1.19730 1.19392 1.19550 0.79171 0.96951 1.47111 0.85810 1.42170 1.07590 1.06258 1.64629 1.17010 0.84910 0.84538 0.85372 1.90652 1.69047 1.30710 1.55947 1.20735 0.95701 0.91921 1.04843 1.21202 0.91630 0.99219 0.99395 1.25369 0.99927 0.98982 1.12953 1.82664 1.04236 1.00692 1.72543 1.25461 0.98588 1.02769 1.11155 0.91256 0.79529 0.83083 0.81871 0.82098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.95 13.96 55.50 0.77 -24.18 14 2 C 0.04 1.17 5.50 -17.45 -0.10 1.07 14 3 Si 0.88 19.19 27.74 -169.99 -4.71 14.48 14 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 14 5 H -0.27 -5.89 7.11 56.52 0.40 -5.49 14 6 H -0.27 -5.38 6.52 56.52 0.37 -5.01 14 7 C -0.30 -8.53 10.16 -14.98 -0.15 -8.68 14 8 H 0.12 4.00 7.38 -52.49 -0.39 3.61 14 9 N -0.57 -14.18 5.06 -12.04 -0.06 -14.24 14 10 C 0.49 12.21 7.74 -12.66 -0.10 12.11 14 11 O -0.58 -16.43 16.37 5.22 0.09 -16.34 14 12 C -0.11 -2.24 5.98 -104.62 -0.63 -2.87 14 13 C -0.08 -1.42 10.10 -39.02 -0.39 -1.81 14 14 C -0.24 -3.17 11.12 28.86 0.32 -2.85 14 15 S 0.14 1.73 23.02 -107.50 -2.47 -0.75 14 16 C -0.24 -3.95 10.38 29.96 0.31 -3.64 14 17 H 0.28 7.29 8.31 -40.82 -0.34 6.95 14 18 H 0.37 8.12 4.26 -40.82 -0.17 7.95 14 19 H 0.15 2.49 8.06 -52.49 -0.42 2.07 14 20 H 0.16 1.63 8.06 -52.48 -0.42 1.21 14 21 H 0.16 2.44 7.01 -52.49 -0.37 2.07 14 LS Contribution 210.93 15.07 3.18 3.18 Total: -1.00 -31.55 210.93 -4.89 -36.44 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -0.94 Total: 8.07 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -0.73 Total: -6.65 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.71 Total: -38.42 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: 0.09 Total: -16.34 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.71 Total: 14.48 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.47 Total: -0.75 kcal Total LS contribution 3.18 Total: 3.18 kcal Total: -31.55 -4.89 -36.44 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037714270.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.028 kcal (2) G-P(sol) polarization free energy of solvation -31.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds