Wall clock time and date at job start Sun Mar 29 2020 22:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48496 * 109.46681 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47048 * 299.99727 * 3 2 1 6 6 H 1.48501 * 109.47100 * 60.00176 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 C 1.52998 * 109.47348 * 179.72561 * 12 10 9 14 14 C 1.54258 * 110.03455 * 292.90875 * 13 12 10 15 15 C 1.54967 * 104.16246 * 217.13741 * 14 13 12 16 16 C 1.54887 * 102.77367 * 37.88475 * 15 14 13 17 17 C 1.53874 * 110.03277 * 175.68717 * 13 12 10 18 18 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 19 19 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 20 20 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 21 21 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 22 22 H 1.09006 * 110.01511 * 54.30082 * 13 12 10 23 23 H 1.09005 * 110.48463 * 335.78619 * 14 13 12 24 24 H 1.09006 * 110.48910 * 98.42335 * 14 13 12 25 25 H 1.09007 * 110.71710 * 279.57479 * 15 14 13 26 26 H 1.09001 * 110.92470 * 156.29521 * 15 14 13 27 27 H 1.09006 * 110.48348 * 203.40513 * 16 15 14 28 28 H 1.08996 * 110.59816 * 80.82043 * 16 15 14 29 29 H 1.09001 * 110.03624 * 238.57082 * 17 13 12 30 30 H 1.09006 * 110.03109 * 359.95719 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 6 2.2377 -6.0259 -0.0048 14 6 3.0038 -6.0582 -1.3433 15 6 3.1669 -7.5683 -1.6506 16 6 1.8190 -8.1626 -1.1722 17 6 1.4850 -7.3635 0.1044 18 1 -0.4850 0.8401 -0.0004 19 1 0.3532 -2.3906 0.0016 20 1 0.6209 -4.9225 0.8949 21 1 0.6128 -4.9187 -0.8850 22 1 2.9382 -5.9230 0.8240 23 1 2.4239 -5.5701 -2.1267 24 1 3.9787 -5.5823 -1.2365 25 1 3.9976 -7.9895 -1.0842 26 1 3.3055 -7.7354 -2.7188 27 1 1.9299 -9.2221 -0.9410 28 1 1.0462 -8.0167 -1.9268 29 1 1.8207 -7.9101 0.9856 30 1 0.4114 -7.1841 0.1632 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037871047.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:26 Heat of formation + Delta-G solvation = -68.721311 kcal Electronic energy + Delta-G solvation = -12454.254937 eV Core-core repulsion = 10248.092467 eV Total energy + Delta-G solvation = -2206.162470 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.77748 -37.08979 -33.87978 -31.31536 -30.68666 -28.34382 -26.03388 -23.98320 -20.43538 -19.62331 -18.79345 -17.78377 -16.04907 -15.16639 -14.76857 -14.31611 -14.12525 -13.73179 -13.04792 -12.69935 -12.24461 -11.58423 -11.46525 -11.05470 -10.93673 -10.66582 -10.65250 -10.42746 -10.32079 -10.23322 -10.13622 -9.99163 -9.46956 -8.27156 -7.91634 -6.37768 -3.78315 3.18603 3.28583 3.36101 3.99398 4.21128 4.82704 4.94917 4.98543 5.23329 5.30524 5.63413 5.71701 5.81756 5.88114 5.96334 5.99183 6.11170 6.13450 6.22275 6.33804 6.44212 6.57756 6.60972 6.80963 6.92923 7.58984 8.11261 8.66493 9.22457 9.61035 10.12827 10.80275 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.081179 B = 0.007364 C = 0.007023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.832833 B = 3801.239104 C = 3986.186159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.020 3.980 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.567 5.567 10 C 0.442 3.558 11 O -0.594 6.594 12 C -0.125 4.125 13 C -0.071 4.071 14 C -0.108 4.108 15 C -0.128 4.128 16 C -0.123 4.123 17 C -0.123 4.123 18 H 0.270 0.730 19 H 0.392 0.608 20 H 0.074 0.926 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.059 0.941 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.043 -11.247 -1.371 11.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.181 4.181 3 Si 0.756 3.244 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.203 5.203 10 C 0.228 3.772 11 O -0.479 6.479 12 C -0.166 4.166 13 C -0.089 4.089 14 C -0.146 4.146 15 C -0.166 4.166 16 C -0.161 4.161 17 C -0.161 4.161 18 H 0.080 0.920 19 H 0.225 0.775 20 H 0.092 0.908 21 H 0.093 0.907 22 H 0.093 0.907 23 H 0.078 0.922 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.723 -11.073 -1.368 11.180 hybrid contribution -0.343 0.953 0.032 1.013 sum 0.379 -10.120 -1.336 10.215 Atomic orbital electron populations 1.69626 1.05933 1.27948 1.50980 1.25260 0.95624 0.99697 0.97493 0.85816 0.79694 0.81249 0.77678 1.19267 1.20780 1.20785 1.19771 0.93385 0.82433 1.47256 0.87952 1.41946 1.09199 1.04765 1.64382 1.20035 0.88365 0.85062 0.83747 1.90492 1.14015 1.87458 1.55941 1.21671 0.98530 0.93988 1.02404 1.21424 0.96299 0.92210 0.99012 1.22336 1.01356 0.94452 0.96410 1.22562 0.97033 0.96840 1.00141 1.22341 0.97602 0.98604 0.97554 1.22266 1.00222 0.96011 0.97570 0.91992 0.77475 0.90762 0.90650 0.90653 0.92181 0.90783 0.91963 0.92205 0.92394 0.91946 0.92226 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.10 13.05 55.50 0.72 -24.38 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 3 Si 0.93 21.39 29.55 -169.99 -5.02 16.37 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.30 -8.52 9.68 -14.93 -0.14 -8.67 16 8 H 0.10 3.06 7.16 -52.48 -0.38 2.68 16 9 N -0.57 -14.79 5.29 -10.96 -0.06 -14.85 16 10 C 0.44 10.65 7.56 -10.98 -0.08 10.56 16 11 O -0.59 -16.15 14.36 5.54 0.08 -16.07 16 12 C -0.13 -2.28 4.83 -27.88 -0.13 -2.41 16 13 C -0.07 -1.16 2.55 -89.51 -0.23 -1.39 16 14 C -0.11 -1.78 5.40 -25.03 -0.14 -1.92 16 15 C -0.13 -1.67 6.91 -24.70 -0.17 -1.84 16 16 C -0.12 -1.46 6.83 -25.07 -0.17 -1.63 16 17 C -0.12 -1.60 6.46 -25.61 -0.17 -1.76 16 18 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 19 H 0.39 9.82 7.90 -40.82 -0.32 9.50 16 20 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 21 H 0.08 1.26 8.02 -51.93 -0.42 0.84 16 22 H 0.07 1.36 7.95 -51.93 -0.41 0.95 16 23 H 0.06 1.03 7.77 -51.93 -0.40 0.62 16 24 H 0.07 1.38 7.63 -51.93 -0.40 0.99 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.77 7.67 -51.93 -0.40 0.37 16 LS Contribution 250.54 15.07 3.78 3.78 Total: -1.00 -30.37 250.54 -6.23 -36.60 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -4.40 Total: 7.14 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -1.33 Total: -8.60 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.67 Total: -39.22 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.08 Total: -16.07 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.37 -6.23 -36.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871047.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.120 kcal (2) G-P(sol) polarization free energy of solvation -30.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds