Wall clock time and date at job start Sun Mar 29 2020 22:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48496 * 109.46681 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47048 * 299.99727 * 3 2 1 6 6 H 1.48501 * 109.47100 * 60.00176 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 C 1.52998 * 109.47348 * 179.72561 * 12 10 9 14 14 C 1.54258 * 110.03455 * 292.90875 * 13 12 10 15 15 C 1.54967 * 104.16246 * 217.13741 * 14 13 12 16 16 C 1.54887 * 102.77367 * 37.88475 * 15 14 13 17 17 C 1.53874 * 110.03277 * 175.68717 * 13 12 10 18 18 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 19 19 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 20 20 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 21 21 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 22 22 H 1.09006 * 110.01511 * 54.30082 * 13 12 10 23 23 H 1.09005 * 110.48463 * 335.78619 * 14 13 12 24 24 H 1.09006 * 110.48910 * 98.42335 * 14 13 12 25 25 H 1.09007 * 110.71710 * 279.57479 * 15 14 13 26 26 H 1.09001 * 110.92470 * 156.29521 * 15 14 13 27 27 H 1.09006 * 110.48348 * 203.40513 * 16 15 14 28 28 H 1.08996 * 110.59816 * 80.82043 * 16 15 14 29 29 H 1.09001 * 110.03624 * 238.57082 * 17 13 12 30 30 H 1.09006 * 110.03109 * 359.95719 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 6 2.2377 -6.0259 -0.0048 14 6 3.0038 -6.0582 -1.3433 15 6 3.1669 -7.5683 -1.6506 16 6 1.8190 -8.1626 -1.1722 17 6 1.4850 -7.3635 0.1044 18 1 -0.4850 0.8401 -0.0004 19 1 0.3532 -2.3906 0.0016 20 1 0.6209 -4.9225 0.8949 21 1 0.6128 -4.9187 -0.8850 22 1 2.9382 -5.9230 0.8240 23 1 2.4239 -5.5701 -2.1267 24 1 3.9787 -5.5823 -1.2365 25 1 3.9976 -7.9895 -1.0842 26 1 3.3055 -7.7354 -2.7188 27 1 1.9299 -9.2221 -0.9410 28 1 1.0462 -8.0167 -1.9268 29 1 1.8207 -7.9101 0.9856 30 1 0.4114 -7.1841 0.1632 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037871047.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:26 Heat of formation + Delta-G solvation = -88.173532 kcal Electronic energy + Delta-G solvation = -12455.098448 eV Core-core repulsion = 10248.092467 eV Total energy + Delta-G solvation = -2207.005981 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.46927 -38.56828 -35.94918 -33.32486 -32.16534 -29.46321 -27.73911 -25.73528 -21.60692 -21.19198 -20.36384 -19.78697 -17.75680 -16.85376 -16.21096 -16.04125 -15.76018 -15.42984 -14.32620 -14.13881 -13.95766 -13.54646 -13.04406 -12.78515 -12.42904 -12.15068 -11.97619 -11.87053 -11.77010 -11.57565 -11.49384 -11.45031 -11.20882 -10.26234 -10.01297 -8.47732 -5.96642 1.35483 1.39987 1.54659 2.07262 2.29452 3.19837 3.25165 3.80391 3.82250 3.93491 4.41063 4.45696 4.53629 4.64445 4.71174 4.81999 4.91805 4.97491 5.04008 5.17902 5.21408 5.31549 5.39691 5.48042 5.55549 5.62674 6.00436 6.59226 7.11932 7.56979 8.12791 8.70207 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.081179 B = 0.007364 C = 0.007023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.832833 B = 3801.239104 C = 3986.186159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.015 4.015 3 Si 0.994 3.006 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.336 4.336 8 H 0.077 0.923 9 N -0.578 5.578 10 C 0.436 3.564 11 O -0.630 6.630 12 C -0.115 4.115 13 C -0.073 4.073 14 C -0.113 4.113 15 C -0.122 4.122 16 C -0.118 4.118 17 C -0.116 4.116 18 H 0.278 0.722 19 H 0.396 0.604 20 H 0.097 0.903 21 H 0.095 0.905 22 H 0.051 0.949 23 H 0.049 0.951 24 H 0.039 0.961 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.906 -12.212 -1.490 12.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.214 4.214 3 Si 0.817 3.183 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.465 4.465 8 H 0.095 0.905 9 N -0.214 5.214 10 C 0.225 3.775 11 O -0.518 6.518 12 C -0.155 4.155 13 C -0.092 4.092 14 C -0.151 4.151 15 C -0.159 4.159 16 C -0.155 4.155 17 C -0.154 4.154 18 H 0.087 0.913 19 H 0.230 0.770 20 H 0.115 0.885 21 H 0.114 0.886 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.057 0.943 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.253 -12.053 -1.486 12.147 hybrid contribution -0.027 1.245 0.069 1.247 sum -0.279 -10.808 -1.417 10.904 Atomic orbital electron populations 1.69684 1.06863 1.29233 1.50545 1.26066 0.96571 1.02477 0.96309 0.84861 0.77947 0.77033 0.78421 1.19886 1.19475 1.19467 1.19726 0.92671 0.84262 1.49856 0.90475 1.42039 1.09306 1.04904 1.65177 1.21148 0.88313 0.86473 0.81590 1.90469 1.16023 1.88262 1.57005 1.21699 0.98661 0.90812 1.04354 1.21457 0.95950 0.93788 0.97988 1.22310 0.99349 0.97040 0.96383 1.22534 0.98372 0.93836 1.01198 1.22344 0.96628 0.99618 0.96928 1.22224 1.00478 0.93733 0.98926 0.91289 0.77047 0.88505 0.88629 0.93000 0.93216 0.94255 0.91462 0.90930 0.89992 0.91129 0.90936 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.88 13.05 21.66 0.28 -50.60 16 2 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 3 Si 0.99 43.80 29.55 68.60 2.03 45.83 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 7 C -0.34 -19.64 9.68 84.04 0.81 -18.83 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.58 -30.75 5.29 -306.98 -1.62 -32.37 16 10 C 0.44 21.47 7.56 87.66 0.66 22.13 16 11 O -0.63 -35.67 14.36 -3.08 -0.04 -35.71 16 12 C -0.12 -4.08 4.83 29.85 0.14 -3.93 16 13 C -0.07 -2.34 2.55 -10.07 -0.03 -2.37 16 14 C -0.11 -3.74 5.40 31.69 0.17 -3.57 16 15 C -0.12 -2.93 6.91 31.91 0.22 -2.71 16 16 C -0.12 -2.36 6.83 31.67 0.22 -2.15 16 17 C -0.12 -2.66 6.46 31.32 0.20 -2.46 16 18 H 0.28 14.25 8.31 -92.71 -0.77 13.47 16 19 H 0.40 20.03 7.90 -92.71 -0.73 19.30 16 20 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 21 H 0.10 3.03 8.02 -2.39 -0.02 3.01 16 22 H 0.05 1.90 7.95 -2.38 -0.02 1.88 16 23 H 0.05 1.71 7.77 -2.38 -0.02 1.69 16 24 H 0.04 1.53 7.63 -2.38 -0.02 1.52 16 25 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 26 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.08 1.58 7.67 -2.38 -0.02 1.56 16 Total: -1.00 -66.38 250.54 3.90 -62.47 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: 0.39 Total: 24.61 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: 2.87 Total: -14.23 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -1.34 Total: -82.97 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -0.04 Total: -35.71 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -66.38 3.90 -62.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871047.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.700 kcal (2) G-P(sol) polarization free energy of solvation -66.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds