Wall clock time and date at job start Sun Mar 29 2020 21:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31657 * 1 3 3 Si 1.86797 * 120.00033 * 2 1 4 4 H 1.48497 * 109.46848 * 269.99625 * 3 2 1 5 5 H 1.48500 * 109.47094 * 29.99746 * 3 2 1 6 6 H 1.48504 * 109.46980 * 149.99887 * 3 2 1 7 7 C 1.38687 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99372 * 180.02562 * 7 2 1 9 9 S 1.76194 * 119.99997 * 0.02562 * 7 2 1 10 10 C 1.76202 * 99.99940 * 185.11919 * 9 7 2 11 11 C 1.39108 * 120.03788 * 85.49335 * 10 9 7 12 12 C 1.37982 * 119.96853 * 180.02562 * 11 10 9 13 13 C 1.38817 * 120.02864 * 0.02562 * 12 11 10 14 14 O 1.35935 * 119.95760 * 179.97438 * 13 12 11 15 15 C 1.38808 * 120.07664 * 0.23590 * 13 12 11 16 16 C 1.37981 * 120.03411 * 359.48899 * 15 13 12 17 17 H 0.96999 * 120.00114 * 0.02562 * 1 2 3 18 18 H 1.08001 * 120.01955 * 359.97438 * 11 10 9 19 19 H 1.07995 * 119.98292 * 180.02562 * 12 11 10 20 20 H 0.96709 * 113.99944 * 90.00443 * 14 13 12 21 21 H 1.07996 * 119.98200 * 179.74172 * 15 13 12 22 22 H 1.07998 * 120.02120 * 180.25097 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3166 0.0000 0.0000 3 14 2.2506 1.6177 0.0000 4 1 2.4981 2.0463 -1.4001 5 1 1.4480 2.6527 0.7000 6 1 3.5481 1.4401 0.7001 7 6 2.0100 -1.2011 0.0005 8 1 3.0899 -1.2010 0.0010 9 16 1.1289 -2.7269 0.0005 10 6 2.4726 -3.8561 0.1561 11 6 2.9712 -4.1760 1.4148 12 6 4.0238 -5.0600 1.5350 13 6 4.5856 -5.6296 0.4005 14 8 5.6229 -6.4999 0.5205 15 6 4.0928 -5.3073 -0.8565 16 6 3.0366 -4.4280 -0.9797 17 1 -0.4850 0.8400 -0.0004 18 1 2.5351 -3.7320 2.2975 19 1 4.4108 -5.3088 2.5120 20 1 5.3525 -7.4241 0.6103 21 1 4.5337 -5.7481 -1.7383 22 1 2.6508 -4.1806 -1.9576 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037995579.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:13 Heat of formation + Delta-G solvation = -27.747924 kcal Electronic energy + Delta-G solvation = -9615.063100 eV Core-core repulsion = 7647.189963 eV Total energy + Delta-G solvation = -1967.873138 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 196.030 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.11888 -36.22267 -32.50517 -30.56699 -29.14863 -25.55575 -22.26427 -22.10171 -18.12283 -17.90264 -16.21625 -15.13124 -15.03400 -14.84999 -13.79556 -13.12388 -13.01876 -12.31708 -11.82288 -11.75333 -11.10752 -11.08340 -10.74105 -10.13982 -9.86771 -9.16130 -8.89251 -8.55552 -7.81700 -6.70173 -6.28388 -4.02315 1.54256 1.81909 3.19150 3.21261 3.27585 3.49585 3.96707 4.22934 4.49023 5.07360 5.32398 5.33215 5.49075 5.91994 5.97077 6.10846 6.44085 6.57142 6.77937 7.04817 7.17950 7.57839 7.85513 8.33301 9.17180 10.78096 Molecular weight = 196.03amu Principal moments of inertia in cm(-1) A = 0.059607 B = 0.009394 C = 0.008887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.629343 B = 2979.900586 C = 3150.058183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.072 3.928 3 Si 0.921 3.079 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.518 4.518 8 H 0.075 0.925 9 S -0.042 6.042 10 C -0.105 4.105 11 C -0.068 4.068 12 C -0.157 4.157 13 C 0.094 3.906 14 O -0.504 6.504 15 C -0.157 4.157 16 C -0.069 4.069 17 H 0.269 0.731 18 H 0.130 0.870 19 H 0.122 0.878 20 H 0.383 0.617 21 H 0.122 0.878 22 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.806 -8.932 0.713 10.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.137 4.137 3 Si 0.747 3.253 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.665 4.665 8 H 0.094 0.906 9 S 0.192 5.808 10 C -0.216 4.216 11 C -0.089 4.089 12 C -0.177 4.177 13 C 0.050 3.950 14 O -0.313 6.313 15 C -0.177 4.177 16 C -0.090 4.090 17 H 0.079 0.921 18 H 0.148 0.852 19 H 0.140 0.860 20 H 0.238 0.762 21 H 0.140 0.860 22 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.803 -8.456 0.587 9.743 hybrid contribution 1.669 0.748 0.173 1.837 sum 6.472 -7.708 0.759 10.094 Atomic orbital electron populations 1.70007 1.05880 1.27616 1.47216 1.25004 0.95137 0.99106 0.94416 0.86116 0.79467 0.81214 0.78493 1.20158 1.20662 1.19592 1.22840 0.94910 0.90219 1.58579 0.90648 1.83525 1.04745 0.97258 1.95234 1.22843 1.02827 1.01661 0.94247 1.21659 0.94421 0.95048 0.97740 1.21385 0.97744 1.00675 0.97929 1.18498 0.89185 0.94783 0.92580 1.84822 1.31080 1.19706 1.95713 1.21364 0.98086 1.01596 0.96680 1.21613 0.93886 0.94616 0.98853 0.92099 0.85186 0.86021 0.76230 0.86009 0.85171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.50 13.22 55.48 0.73 -24.76 14 2 C 0.07 2.03 5.49 -17.46 -0.10 1.93 14 3 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 14 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 14 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 14 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 14 7 C -0.52 -14.72 9.46 30.90 0.29 -14.43 14 8 H 0.08 2.14 7.79 -52.49 -0.41 1.73 14 9 S -0.04 -1.08 21.41 -107.50 -2.30 -3.38 14 10 C -0.11 -2.29 5.46 -38.93 -0.21 -2.50 14 11 C -0.07 -1.32 9.79 -39.35 -0.39 -1.71 14 12 C -0.16 -2.65 9.98 -39.46 -0.39 -3.04 14 13 C 0.09 1.53 6.71 -39.16 -0.26 1.26 14 14 O -0.50 -6.91 13.50 -19.53 -0.26 -7.18 14 15 C -0.16 -2.62 9.98 -39.46 -0.39 -3.01 14 16 C -0.07 -1.32 9.79 -39.35 -0.39 -1.71 14 17 H 0.27 7.33 8.31 -40.82 -0.34 6.99 14 18 H 0.13 2.48 8.06 -52.49 -0.42 2.05 14 19 H 0.12 1.74 8.06 -52.49 -0.42 1.32 14 20 H 0.38 3.19 9.06 45.56 0.41 3.60 14 21 H 0.12 1.71 8.06 -52.49 -0.42 1.29 14 22 H 0.13 2.39 8.06 -52.49 -0.42 1.97 14 LS Contribution 223.05 15.07 3.36 3.36 Total: -1.00 -31.36 223.05 -6.15 -37.51 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -0.82 Total: 1.21 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: -1.84 Total: -23.20 kcal Atomic # 7 Polarization: -25.50 SS G_CDS: 0.73 Total: -24.76 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.26 Total: -7.18 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.08 SS G_CDS: -2.30 Total: -3.38 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -31.36 -6.15 -37.51 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037995579.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.766 kcal (2) G-P(sol) polarization free energy of solvation -31.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds