Wall clock time and date at job start Sun Mar 29 2020 21:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30610 * 1 3 3 Si 1.86802 * 119.99822 * 2 1 4 4 H 1.48503 * 109.46824 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47195 * 299.99629 * 3 2 1 6 6 H 1.48504 * 109.46981 * 60.00066 * 3 2 1 7 7 C 1.40176 * 120.00322 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00047 * 180.02562 * 7 2 1 9 9 C 1.41749 * 119.99945 * 359.97438 * 7 2 1 10 10 O 1.21789 * 119.99678 * 0.02562 * 9 7 2 11 11 N 1.34771 * 120.00137 * 180.02562 * 9 7 2 12 12 N 1.40101 * 120.00150 * 180.02562 * 11 9 7 13 13 C 1.28047 * 120.00178 * 180.02562 * 12 11 9 14 14 C 1.51445 * 126.34202 * 359.68396 * 13 12 11 15 15 C 1.54277 * 106.84986 * 180.62084 * 14 13 12 16 16 C 1.54975 * 103.75066 * 23.12954 * 15 14 13 17 17 C 1.51846 * 126.34159 * 180.02562 * 13 12 11 18 18 H 0.97002 * 120.00453 * 0.02562 * 1 2 3 19 19 H 0.97001 * 119.99917 * 0.02562 * 11 9 7 20 20 H 1.08995 * 109.98545 * 299.97485 * 14 13 12 21 21 H 1.09011 * 109.97778 * 61.27307 * 14 13 12 22 22 H 1.08999 * 110.57233 * 264.55645 * 15 14 13 23 23 H 1.09008 * 110.56542 * 141.69541 * 15 14 13 24 24 H 1.09009 * 110.83306 * 204.70511 * 16 15 14 25 25 H 1.08993 * 110.83946 * 81.12387 * 16 15 14 26 26 H 1.09006 * 110.43812 * 274.68261 * 17 13 12 27 27 H 1.09000 * 110.43863 * 37.08312 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2401 1.6178 0.0000 4 1 3.7001 1.3464 0.0006 5 1 1.8814 2.3964 -1.2125 6 1 1.8813 2.3965 1.2125 7 6 2.0070 -1.2139 0.0005 8 1 3.0870 -1.2139 0.0010 9 6 1.2984 -2.4415 0.0016 10 8 0.0805 -2.4415 0.0016 11 7 1.9722 -3.6087 0.0027 12 7 1.2718 -4.8220 0.0032 13 6 1.9120 -5.9309 0.0047 14 6 3.4172 -6.0982 -0.0007 15 6 3.6985 -7.6151 -0.0123 16 6 2.4029 -8.2255 -0.6043 17 6 1.3027 -7.3218 0.0049 18 1 -0.4851 0.8400 -0.0004 19 1 2.9422 -3.6086 0.0031 20 1 3.8404 -5.6340 -0.8914 21 1 3.8454 -5.6467 0.8944 22 1 3.8664 -7.9812 1.0006 23 1 4.5541 -7.8410 -0.6489 24 1 2.2786 -9.2591 -0.2812 25 1 2.4032 -8.1556 -1.6920 26 1 1.0724 -7.6363 1.0229 27 1 0.4044 -7.3439 -0.6120 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038265643.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:47 Heat of formation + Delta-G solvation = -17.820830 kcal Electronic energy + Delta-G solvation = -11901.455565 eV Core-core repulsion = 9659.385873 eV Total energy + Delta-G solvation = -2242.069692 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.35828 -36.97727 -34.25906 -32.51781 -30.25162 -28.64329 -26.72497 -24.89668 -20.93322 -20.18212 -18.37263 -17.30425 -16.03150 -15.60985 -15.40338 -14.01660 -13.38821 -13.27052 -13.14945 -12.51724 -12.33933 -11.74069 -11.29162 -11.16510 -11.08852 -10.96869 -10.59204 -10.56640 -10.30576 -10.29384 -9.17360 -8.94934 -7.68617 -7.39680 -6.33179 -4.86809 2.84420 3.08164 3.13939 3.19174 3.76802 4.13214 4.50945 4.81688 4.91891 5.08806 5.38112 5.53013 5.66170 5.79076 5.82638 5.89816 5.97618 6.08428 6.18769 6.35213 6.44636 6.99470 7.27642 7.90623 8.08798 8.83278 8.89280 9.41308 10.46957 10.73304 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.080635 B = 0.007477 C = 0.006919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 347.161070 B = 3743.764764 C = 4045.769155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.088 3.912 3 Si 0.916 3.084 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.070 0.930 9 C 0.561 3.439 10 O -0.554 6.554 11 N -0.597 5.597 12 N -0.199 5.199 13 C 0.021 3.979 14 C -0.120 4.120 15 C -0.116 4.116 16 C -0.120 4.120 17 C -0.058 4.058 18 H 0.273 0.727 19 H 0.367 0.633 20 H 0.071 0.929 21 H 0.070 0.930 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.067 -10.383 -0.227 13.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.135 4.135 3 Si 0.740 3.260 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.577 4.577 8 H 0.088 0.912 9 C 0.368 3.632 10 O -0.433 6.433 11 N -0.343 5.343 12 N -0.005 5.005 13 C -0.174 4.174 14 C -0.160 4.160 15 C -0.154 4.154 16 C -0.159 4.159 17 C -0.097 4.097 18 H 0.083 0.917 19 H 0.203 0.797 20 H 0.089 0.911 21 H 0.089 0.911 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.112 -9.666 -0.226 11.438 hybrid contribution 1.853 0.635 0.015 1.959 sum 7.965 -9.031 -0.211 12.044 Atomic orbital electron populations 1.70027 1.07306 1.27771 1.32633 1.25755 0.94664 1.00596 0.92450 0.86182 0.80422 0.80973 0.78430 1.18580 1.19888 1.19893 1.19973 0.94278 0.89480 1.53935 0.91159 1.17047 0.87758 0.80461 0.77898 1.90658 1.13635 1.85424 1.53614 1.47812 1.07173 1.01556 1.77747 1.73861 1.26884 0.92217 1.07578 1.24974 0.93320 0.94063 1.05072 1.21566 0.94968 0.97437 1.02058 1.22239 0.97701 0.94502 1.00967 1.22489 0.94579 0.98393 1.00393 1.21021 0.98107 0.89058 1.01558 0.91650 0.79746 0.91078 0.91118 0.91419 0.91597 0.91112 0.91252 0.90274 0.90569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -22.54 11.73 55.56 0.65 -21.88 15 2 C 0.09 2.45 5.50 -17.34 -0.10 2.36 15 3 Si 0.92 19.83 29.56 -169.99 -5.02 14.81 15 4 H -0.26 -5.44 7.11 56.52 0.40 -5.04 15 5 H -0.27 -5.78 7.11 56.52 0.40 -5.38 15 6 H -0.27 -5.79 7.11 56.52 0.40 -5.38 15 7 C -0.54 -15.45 9.31 -37.51 -0.35 -15.80 15 8 H 0.07 1.81 7.85 -52.49 -0.41 1.40 15 9 C 0.56 17.01 7.69 -14.92 -0.11 16.90 15 10 O -0.55 -19.20 15.22 5.11 0.08 -19.13 15 11 N -0.60 -15.10 6.21 29.13 0.18 -14.91 15 12 N -0.20 -4.75 11.04 36.07 0.40 -4.35 15 13 C 0.02 0.39 7.47 -77.96 -0.58 -0.20 15 14 C -0.12 -1.71 5.49 -26.85 -0.15 -1.85 15 15 C -0.12 -1.24 6.87 -25.02 -0.17 -1.42 15 16 C -0.12 -1.28 6.95 -24.70 -0.17 -1.45 15 17 C -0.06 -0.80 6.72 -26.33 -0.18 -0.98 15 18 H 0.27 7.30 8.29 -40.82 -0.34 6.96 15 19 H 0.37 7.96 7.67 -182.60 -1.40 6.56 15 20 H 0.07 1.01 8.14 -51.93 -0.42 0.59 15 21 H 0.07 1.00 8.14 -51.92 -0.42 0.57 15 22 H 0.07 0.66 8.14 -51.93 -0.42 0.23 15 23 H 0.07 0.61 8.14 -51.92 -0.42 0.19 15 24 H 0.07 0.60 8.14 -51.92 -0.42 0.18 15 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 26 H 0.08 1.00 8.14 -51.93 -0.42 0.58 15 27 H 0.08 1.07 8.14 -51.93 -0.42 0.65 15 LS Contribution 240.03 15.07 3.62 3.62 Total: -1.00 -35.64 240.03 -6.24 -41.87 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -4.33 Total: 2.41 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -1.81 Total: -2.43 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 1.23 Total: -41.15 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: 0.08 Total: -19.13 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -35.64 -6.24 -41.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038265643.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.053 kcal (2) G-P(sol) polarization free energy of solvation -35.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds