Wall clock time and date at job start Sun Mar 29 2020 21:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.36891 * 126.39629 * 265.01913 * 10 9 7 12 12 C 1.34669 * 106.81919 * 179.97438 * 11 10 9 13 13 N 1.34135 * 108.01844 * 0.02562 * 12 11 10 14 14 C 1.30502 * 109.25736 * 359.74224 * 13 12 11 15 15 N 1.48024 * 125.64843 * 180.28486 * 14 13 12 16 16 O 1.21809 * 119.99341 * 180.14746 * 15 14 13 17 17 O 1.21798 * 120.00412 * 0.14374 * 15 14 13 18 18 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 20 20 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 21 21 H 1.08001 * 126.58977 * 0.02562 * 11 10 9 22 22 H 1.07997 * 125.98975 * 180.02562 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 2.6580 -4.2873 -1.1109 12 6 3.5127 -5.2279 -0.6655 13 7 3.5772 -5.1307 0.6707 14 6 2.7992 -4.1619 1.0698 15 7 2.6011 -3.7372 2.4739 16 8 1.8448 -2.8176 2.7310 17 8 3.1943 -4.3072 3.3721 18 1 -0.4850 0.8401 -0.0004 19 1 0.6242 -2.5609 0.8844 20 1 0.6244 -2.5529 -0.8956 21 1 2.3849 -4.1006 -2.1390 22 1 4.0517 -5.9364 -1.2770 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039241014.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:22 Heat of formation + Delta-G solvation = 61.761686 kcal Electronic energy + Delta-G solvation = -12297.265841 eV Core-core repulsion = 9857.388101 eV Total energy + Delta-G solvation = -2439.877740 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.32499 -41.06221 -36.11683 -34.37027 -32.40964 -30.24796 -27.77312 -25.88829 -23.53606 -21.39821 -20.95130 -18.05260 -18.00232 -17.40279 -16.70699 -15.96481 -14.73106 -14.54139 -14.12507 -13.24634 -12.58311 -12.18363 -11.33529 -11.07773 -10.99033 -10.69959 -10.60132 -10.45083 -10.37000 -10.07967 -9.20034 -8.78349 -8.67182 -6.43421 -4.53091 0.67502 1.41213 2.36081 3.10590 3.15209 3.20188 3.21894 3.34388 4.17124 4.83761 4.92984 5.26420 5.45921 5.86941 6.29656 6.56306 6.77713 6.94867 7.25040 7.46738 7.61066 7.67353 8.34379 8.47268 9.15018 10.65637 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.039397 B = 0.012864 C = 0.011115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.546592 B = 2176.053290 C = 2518.564773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.076 3.924 3 Si 0.910 3.090 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.547 4.547 8 H 0.062 0.938 9 C 0.216 3.784 10 N -0.377 5.377 11 C 0.009 3.991 12 C -0.028 4.028 13 N -0.428 5.428 14 C 0.224 3.776 15 N 0.070 4.930 16 O -0.117 6.117 17 O -0.148 6.148 18 H 0.272 0.728 19 H 0.074 0.926 20 H 0.060 0.940 21 H 0.193 0.807 22 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.667 -5.328 -3.190 6.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.130 4.130 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.196 1.196 7 C -0.585 4.585 8 H 0.080 0.920 9 C 0.098 3.902 10 N -0.059 5.059 11 C -0.134 4.134 12 C -0.183 4.183 13 N -0.155 5.155 14 C -0.113 4.113 15 N 0.592 4.408 16 O -0.336 6.336 17 O -0.359 6.359 18 H 0.082 0.918 19 H 0.091 0.909 20 H 0.078 0.922 21 H 0.210 0.790 22 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 2.893 -5.700 -3.160 7.130 hybrid contribution -0.116 1.528 -0.298 1.561 sum 2.777 -4.172 -3.459 6.089 Atomic orbital electron populations 1.69888 1.06089 1.28256 1.47608 1.24861 0.94998 0.99507 0.93605 0.86347 0.79488 0.81465 0.79060 1.19958 1.20638 1.19634 1.20972 0.93256 0.89084 1.55162 0.91974 1.20434 0.86943 0.81138 1.01651 1.46121 1.30814 1.25181 1.03776 1.23208 1.00611 0.96214 0.93324 1.22444 1.03641 1.02917 0.89281 1.69871 1.17434 1.14869 1.13348 1.22562 1.05855 1.00832 0.82014 1.41848 0.99634 0.99703 0.99617 1.94704 1.31902 1.19161 1.87816 1.94530 1.48364 1.56561 1.36479 0.91821 0.90855 0.92165 0.78987 0.79521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.86 13.29 55.43 0.74 -23.12 14 2 C 0.08 1.99 5.46 -17.82 -0.10 1.89 14 3 Si 0.91 20.51 29.54 -169.99 -5.02 15.49 14 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 14 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 14 6 H -0.27 -6.21 7.11 56.52 0.40 -5.80 14 7 C -0.55 -14.28 9.31 -34.44 -0.32 -14.60 14 8 H 0.06 1.67 7.81 -52.49 -0.41 1.26 14 9 C 0.22 5.10 5.19 -5.20 -0.03 5.07 14 10 N -0.38 -7.93 2.73 -116.20 -0.32 -8.24 14 11 C 0.01 0.15 11.58 -16.56 -0.19 -0.04 14 12 C -0.03 -0.44 11.87 -17.81 -0.21 -0.65 14 13 N -0.43 -8.63 11.21 -11.65 -0.13 -8.76 14 14 C 0.22 4.94 8.84 -306.53 -2.71 2.23 14 15 N 0.07 1.60 4.45 32.09 0.14 1.74 14 16 O -0.12 -2.83 16.80 -29.46 -0.50 -3.32 14 17 O -0.15 -3.28 19.23 -29.46 -0.57 -3.85 14 18 H 0.27 6.96 8.31 -40.82 -0.34 6.62 14 19 H 0.07 1.87 6.59 -51.93 -0.34 1.53 14 20 H 0.06 1.39 8.13 -51.93 -0.42 0.97 14 21 H 0.19 2.35 8.06 -52.49 -0.42 1.93 14 22 H 0.19 2.06 8.06 -52.49 -0.42 1.63 14 LS Contribution 217.78 15.07 3.28 3.28 Total: -1.00 -29.12 217.78 -7.08 -36.20 By element: Atomic # 1 Polarization: -2.15 SS G_CDS: -1.16 Total: -3.30 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -3.56 Total: -6.11 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.43 Total: -38.39 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -1.06 Total: -7.17 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -29.12 -7.08 -36.20 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039241014.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.965 kcal (2) G-P(sol) polarization free energy of solvation -29.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds