Wall clock time and date at job start Sun Mar 29 2020 21:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 110.53568 * 2 1 4 4 C 1.54225 * 110.60583 * 123.01484 * 2 1 3 5 5 C 1.51315 * 103.55466 * 118.52074 * 4 2 1 6 6 O 1.21227 * 125.39367 * 179.97438 * 5 4 2 7 7 N 1.33868 * 109.20765 * 359.97438 * 5 4 2 8 8 C 1.46500 * 122.76486 * 180.02562 * 7 5 4 9 9 C 1.50702 * 109.46966 * 269.99882 * 8 7 5 10 10 H 1.07997 * 120.00075 * 0.02562 * 9 8 7 11 11 C 1.37872 * 119.99873 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00431 * 179.97438 * 11 9 8 13 13 Si 1.86808 * 120.00055 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.46966 * 89.99801 * 13 11 9 15 15 H 1.48496 * 109.47043 * 209.99557 * 13 11 9 16 16 H 1.48493 * 109.47039 * 329.99743 * 13 11 9 17 17 C 1.33877 * 114.47587 * 359.97438 * 7 5 4 18 18 O 1.21231 * 125.39681 * 179.97438 * 17 7 5 19 19 H 1.09001 * 109.47002 * 181.39384 * 1 2 3 20 20 H 1.08993 * 109.46955 * 301.39821 * 1 2 3 21 21 H 1.09000 * 109.47050 * 61.39650 * 1 2 3 22 22 H 1.09006 * 110.60468 * 237.03945 * 4 2 1 23 23 H 1.09001 * 110.60753 * 0.02562 * 4 2 1 24 24 H 1.09006 * 109.47141 * 29.99661 * 8 7 5 25 25 H 1.08999 * 109.47610 * 149.99610 * 8 7 5 26 26 H 0.96995 * 120.00513 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0728 -0.7865 1.2105 5 6 2.8551 -1.9165 0.5773 6 8 3.4530 -2.7811 1.1811 7 7 2.7822 -1.8101 -0.7551 8 6 3.4364 -2.7557 -1.6630 9 6 4.8294 -2.2720 -1.9737 10 1 5.1914 -1.3524 -1.5381 11 6 5.6421 -3.0039 -2.8131 12 7 6.8576 -2.5816 -3.0847 13 14 5.0162 -4.5949 -3.5659 14 1 4.3579 -4.3026 -4.8645 15 1 6.1564 -5.5204 -3.7863 16 1 4.0368 -5.2263 -2.6455 17 6 2.0614 -0.7691 -1.1898 18 8 1.8668 -0.4863 -2.3525 19 1 -0.3633 -1.0274 0.0250 20 1 -0.3633 0.5354 0.8771 21 1 -0.3633 0.4920 -0.9022 22 1 2.7275 -0.1579 1.8142 23 1 1.2529 -1.1782 1.8124 24 1 3.4894 -3.7363 -1.1898 25 1 2.8626 -2.8287 -2.5868 26 1 7.4292 -3.0963 -3.6756 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040739967.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:53 Heat of formation + Delta-G solvation = -71.204606 kcal Electronic energy + Delta-G solvation = -12575.051963 eV Core-core repulsion = 10232.948714 eV Total energy + Delta-G solvation = -2342.103248 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.26955 -37.92233 -35.32961 -34.38502 -32.44104 -29.10933 -27.27641 -24.40199 -22.64818 -21.19748 -18.82686 -17.28155 -16.52228 -16.04823 -15.65684 -14.51569 -14.11067 -13.90122 -13.68402 -13.41824 -12.78253 -12.44301 -12.31430 -11.95568 -11.63509 -11.18678 -11.13060 -10.68658 -10.38024 -9.90297 -9.62486 -9.38206 -8.68503 -8.66307 -6.17012 -4.18689 2.06744 3.22294 3.26624 3.32003 3.32998 3.42849 4.32668 4.33726 4.59354 4.66311 4.94065 5.15594 5.30078 5.53365 5.54515 5.76663 5.87926 6.05533 6.34209 6.55233 6.67619 7.42335 7.66397 7.97640 8.26259 8.50603 8.81719 9.39921 10.95933 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.047452 B = 0.011659 C = 0.010762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.930033 B = 2401.019860 C = 2601.177917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.131 4.131 3 H 0.119 0.881 4 C -0.155 4.155 5 C 0.524 3.476 6 O -0.486 6.486 7 N -0.553 5.553 8 C 0.201 3.799 9 C -0.538 4.538 10 H 0.076 0.924 11 C 0.078 3.922 12 N -0.891 5.891 13 Si 0.876 3.124 14 H -0.271 1.271 15 H -0.281 1.281 16 H -0.264 1.264 17 C 0.527 3.473 18 O -0.483 6.483 19 H 0.059 0.941 20 H 0.070 0.930 21 H 0.069 0.931 22 H 0.114 0.886 23 H 0.113 0.887 24 H 0.048 0.952 25 H 0.044 0.956 26 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.205 3.772 7.236 14.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.153 4.153 3 H 0.137 0.863 4 C -0.195 4.195 5 C 0.312 3.688 6 O -0.359 6.359 7 N -0.293 5.293 8 C 0.082 3.918 9 C -0.576 4.576 10 H 0.094 0.906 11 C -0.126 4.126 12 N -0.528 5.528 13 Si 0.703 3.297 14 H -0.197 1.197 15 H -0.206 1.206 16 H -0.189 1.189 17 C 0.315 3.685 18 O -0.355 6.355 19 H 0.079 0.921 20 H 0.089 0.911 21 H 0.088 0.912 22 H 0.133 0.867 23 H 0.131 0.869 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.788 3.370 6.789 14.015 hybrid contribution 0.033 -0.780 -0.514 0.935 sum -11.755 2.590 6.275 13.574 Atomic orbital electron populations 1.21662 0.91516 1.02789 1.03179 1.22070 0.98705 1.01466 0.93016 0.86305 1.22588 1.01665 0.96799 0.98486 1.20595 0.79835 0.86034 0.82354 1.90720 1.41273 1.37107 1.66761 1.46718 1.45568 1.27632 1.09369 1.19995 0.94306 0.88607 0.88883 1.21101 0.95882 1.10575 1.29999 0.90589 1.24801 0.94594 0.97684 0.95512 1.69874 1.07668 1.39163 1.36128 0.86835 0.79088 0.83538 0.80284 1.19675 1.20611 1.18858 1.20577 0.77258 0.80549 0.90162 1.90708 1.57089 1.68301 1.19406 0.92145 0.91091 0.91156 0.86734 0.86853 0.93396 0.93854 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 9.09 37.16 0.34 -0.96 15 2 C -0.13 -1.65 3.69 -90.83 -0.34 -1.98 15 3 H 0.12 1.28 8.14 -51.93 -0.42 0.86 15 4 C -0.16 -1.89 6.67 -26.94 -0.18 -2.07 15 5 C 0.52 9.99 8.08 -11.09 -0.09 9.90 15 6 O -0.49 -10.96 17.48 5.60 0.10 -10.87 15 7 N -0.55 -11.83 2.54 -116.62 -0.30 -12.12 15 8 C 0.20 5.09 4.37 -5.19 -0.02 5.07 15 9 C -0.54 -15.88 9.94 -34.44 -0.34 -16.22 15 10 H 0.08 2.44 8.06 -52.49 -0.42 2.02 15 11 C 0.08 2.30 5.47 -17.82 -0.10 2.20 15 12 N -0.89 -27.70 13.96 55.43 0.77 -26.92 15 13 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 15 14 H -0.27 -6.57 7.11 56.52 0.40 -6.17 15 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 16 H -0.26 -6.26 6.54 56.52 0.37 -5.89 15 17 C 0.53 10.07 7.40 -11.09 -0.08 9.99 15 18 O -0.48 -10.84 17.48 5.60 0.10 -10.74 15 19 H 0.06 0.59 8.14 -51.93 -0.42 0.17 15 20 H 0.07 0.49 8.14 -51.93 -0.42 0.07 15 21 H 0.07 0.72 8.14 -51.93 -0.42 0.29 15 22 H 0.11 1.17 8.14 -51.93 -0.42 0.75 15 23 H 0.11 1.06 7.74 -51.93 -0.40 0.65 15 24 H 0.05 1.22 6.89 -51.93 -0.36 0.86 15 25 H 0.04 1.09 7.26 -51.93 -0.38 0.71 15 26 H 0.27 7.71 8.31 -40.82 -0.34 7.37 15 LS Contribution 233.35 15.07 3.52 3.52 Total: -1.00 -34.77 233.35 -4.13 -38.90 By element: Atomic # 1 Polarization: -1.89 SS G_CDS: -2.84 Total: -4.73 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -0.81 Total: 5.92 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.48 Total: -39.04 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: 0.20 Total: -21.61 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -34.77 -4.13 -38.90 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040739967.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.300 kcal (2) G-P(sol) polarization free energy of solvation -34.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds