Wall clock time and date at job start Sun Mar 29 2020 22:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00342 * 2 1 4 4 H 1.48499 * 109.47087 * 274.97813 * 3 2 1 5 5 H 1.48500 * 109.46911 * 34.97890 * 3 2 1 6 6 H 1.48504 * 109.47058 * 154.97354 * 3 2 1 7 7 C 1.38816 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00603 * 192.20512 * 7 2 1 9 9 N 1.36937 * 119.99692 * 12.20377 * 7 2 1 10 10 C 1.48144 * 122.64795 * 25.98759 * 9 7 2 11 11 C 1.52775 * 110.69338 * 131.61401 * 10 9 7 12 12 O 1.43921 * 111.92622 * 45.21088 * 11 10 9 13 13 C 1.41094 * 111.16456 * 302.00996 * 12 11 10 14 14 H 1.08999 * 109.77885 * 309.03846 * 13 12 11 15 15 C 1.52788 * 118.42085 * 181.80187 * 13 12 11 16 16 C 1.55478 * 102.76516 * 201.28587 * 15 13 12 17 17 C 1.55035 * 106.30921 * 23.95571 * 16 15 13 18 18 C 1.45638 * 122.64693 * 205.99713 * 9 7 2 19 19 H 1.08997 * 109.90752 * 119.15624 * 18 9 7 20 20 H 0.97004 * 119.99896 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.23227 * 11.30730 * 10 9 7 22 22 H 1.08997 * 109.24068 * 251.92952 * 10 9 7 23 23 H 1.09002 * 108.98778 * 284.58656 * 11 10 9 24 24 H 1.08996 * 108.92411 * 165.80321 * 11 10 9 25 25 H 1.09003 * 110.75208 * 319.60196 * 15 13 12 26 26 H 1.09001 * 110.75558 * 82.96534 * 15 13 12 27 27 H 1.08997 * 110.08644 * 264.74846 * 16 15 13 28 28 H 1.08992 * 110.08422 * 143.16776 * 16 15 13 29 29 H 1.09000 * 110.29362 * 245.11234 * 17 16 15 30 30 H 1.08999 * 110.37395 * 123.03555 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3926 2.1071 -1.3948 5 1 1.5043 2.6200 0.8026 6 1 3.5964 1.4120 0.5923 7 6 2.0102 -1.2022 0.0005 8 1 3.0719 -1.2128 0.1983 9 7 1.3487 -2.3748 -0.2496 10 6 0.1026 -2.4346 -1.0486 11 6 0.1922 -3.5328 -2.1070 12 8 0.7259 -4.7560 -1.5684 13 6 2.0066 -4.5518 -1.0125 14 1 2.6438 -4.0388 -1.7328 15 6 2.7464 -5.7547 -0.4292 16 6 3.7719 -5.0932 0.5341 17 6 3.1845 -3.7091 0.9118 18 6 1.8145 -3.6614 0.2490 19 1 1.0613 -4.1008 0.9029 20 1 -0.4850 0.8401 -0.0004 21 1 -0.0553 -1.4745 -1.5400 22 1 -0.7386 -2.6413 -0.3871 23 1 0.8357 -3.1919 -2.9181 24 1 -0.8051 -3.7247 -2.5025 25 1 2.0612 -6.4003 0.1202 26 1 3.2576 -6.3117 -1.2144 27 1 4.7310 -4.9683 0.0314 28 1 3.8940 -5.7047 1.4280 29 1 3.8190 -2.9111 0.5261 30 1 3.0841 -3.6219 1.9936 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042292952.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:19 Heat of formation + Delta-G solvation = -23.846265 kcal Electronic energy + Delta-G solvation = -13318.462716 eV Core-core repulsion = 11114.246175 eV Total energy + Delta-G solvation = -2204.216542 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.19693 -35.44153 -34.33305 -31.02646 -28.67121 -27.49144 -26.12831 -23.22675 -21.39535 -19.92925 -19.44427 -16.39257 -15.84732 -15.39758 -14.56346 -14.25571 -13.91276 -13.48038 -13.01310 -12.75977 -12.06326 -11.78913 -11.09383 -11.04884 -10.81558 -10.76374 -10.36624 -10.22358 -10.11638 -9.97023 -9.79617 -9.49292 -8.83916 -8.46775 -6.62903 -5.78485 -3.22964 3.35950 3.42513 3.44077 4.39953 4.46140 5.17174 5.25794 5.28153 5.39396 5.70259 5.92860 5.98978 6.07123 6.09098 6.15338 6.24091 6.28885 6.35816 6.50399 6.69231 6.70788 6.82230 7.00607 7.25216 7.54961 7.75438 7.98302 8.37497 9.15134 9.80001 10.42794 11.29891 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.042702 B = 0.013536 C = 0.010997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.549332 B = 2068.051075 C = 2545.433901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.001 4.001 3 Si 0.906 3.094 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.587 5.587 10 C 0.138 3.862 11 C 0.040 3.960 12 O -0.383 6.383 13 C 0.052 3.948 14 H 0.055 0.945 15 C -0.109 4.109 16 C -0.117 4.117 17 C -0.117 4.117 18 C 0.138 3.862 19 H 0.035 0.965 20 H 0.254 0.746 21 H 0.098 0.902 22 H 0.026 0.974 23 H 0.038 0.962 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.229 -7.353 -1.472 8.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.199 4.199 3 Si 0.736 3.264 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.310 5.310 10 C 0.012 3.988 11 C -0.037 4.037 12 O -0.302 6.302 13 C -0.008 4.008 14 H 0.073 0.927 15 C -0.147 4.147 16 C -0.155 4.155 17 C -0.154 4.154 18 C 0.030 3.970 19 H 0.053 0.947 20 H 0.064 0.936 21 H 0.116 0.884 22 H 0.044 0.956 23 H 0.057 0.943 24 H 0.099 0.901 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.035 -7.330 -1.449 8.492 hybrid contribution 0.390 1.205 -0.005 1.267 sum 4.424 -6.125 -1.454 7.694 Atomic orbital electron populations 1.69971 1.05223 1.25419 1.54779 1.25081 0.95437 0.98308 1.01033 0.86213 0.79035 0.83625 0.77563 1.21510 1.21698 1.20372 1.19145 0.91461 0.83635 1.43088 0.91013 1.43929 1.27815 1.01763 1.57504 1.21477 0.88224 0.97257 0.91814 1.23329 0.97519 0.86023 0.96874 1.87710 1.31886 1.32359 1.78229 1.23014 0.85070 0.96210 0.96491 0.92676 1.22023 0.97422 0.96801 0.98461 1.22456 0.97924 0.96593 0.98500 1.21834 0.97218 0.96258 1.00132 1.21454 0.94246 0.88292 0.93006 0.94699 0.93601 0.88418 0.95628 0.94339 0.90141 0.91198 0.91913 0.91999 0.91914 0.90679 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.50 10.98 55.49 0.61 -25.89 16 2 C 0.00 -0.02 5.12 -17.43 -0.09 -0.11 16 3 Si 0.91 21.74 29.57 -169.99 -5.03 16.71 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.24 -6.71 9.34 -15.06 -0.14 -6.85 16 8 H 0.07 1.91 6.30 -52.49 -0.33 1.58 16 9 N -0.59 -15.20 3.00 -163.95 -0.49 -15.69 16 10 C 0.14 3.41 5.38 -3.25 -0.02 3.39 16 11 C 0.04 0.84 6.81 37.04 0.25 1.09 16 12 O -0.38 -8.14 10.85 -34.89 -0.38 -8.52 16 13 C 0.05 1.05 2.97 -25.46 -0.08 0.97 16 14 H 0.06 1.16 8.00 -51.93 -0.42 0.74 16 15 C -0.11 -1.74 6.77 -25.52 -0.17 -1.91 16 16 C -0.12 -1.74 6.88 -24.34 -0.17 -1.91 16 17 C -0.12 -2.20 6.12 -26.03 -0.16 -2.35 16 18 C 0.14 3.07 3.17 -67.39 -0.21 2.85 16 19 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 20 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 21 H 0.10 2.62 6.21 -51.93 -0.32 2.30 16 22 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.04 0.78 8.09 -51.93 -0.42 0.36 16 24 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 25 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 1.50 6.43 -51.93 -0.33 1.17 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 236.76 15.07 3.57 3.57 Total: -1.00 -29.78 236.76 -6.84 -36.62 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -4.34 Total: -1.98 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -0.78 Total: -4.82 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.12 Total: -41.58 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -0.38 Total: -8.52 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -29.78 -6.84 -36.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042292952.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.778 kcal (2) G-P(sol) polarization free energy of solvation -29.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds