Wall clock time and date at job start Sun Mar 29 2020 21:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38684 * 120.71679 * 2 1 4 4 N 1.32225 * 119.19381 * 179.97438 * 3 2 1 5 5 C 1.32548 * 120.74245 * 359.97438 * 4 3 2 6 6 S 1.76201 * 119.21658 * 180.02562 * 5 4 3 7 7 C 1.76199 * 99.99986 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00405 * 0.02562 * 7 6 5 9 9 C 1.38790 * 119.99998 * 179.72355 * 7 6 5 10 10 N 1.31564 * 119.99571 * 0.27749 * 9 7 6 11 11 Si 1.86798 * 120.00416 * 180.27925 * 9 7 6 12 12 H 1.48500 * 109.47353 * 89.99672 * 11 9 7 13 13 H 1.48494 * 109.47031 * 210.00219 * 11 9 7 14 14 H 1.48504 * 109.46680 * 329.99921 * 11 9 7 15 15 N 1.32562 * 121.56724 * 0.27817 * 5 4 3 16 16 C 1.32214 * 120.74284 * 359.44632 * 15 5 4 17 17 H 1.08995 * 109.47120 * 90.01172 * 1 2 3 18 18 H 1.09008 * 109.46680 * 210.00043 * 1 2 3 19 19 H 1.08992 * 109.47582 * 330.00083 * 1 2 3 20 20 H 1.07997 * 120.40094 * 359.94951 * 3 2 1 21 21 H 0.97005 * 119.99685 * 179.97438 * 10 9 7 22 22 H 1.08005 * 120.40655 * 180.25791 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2154 1.1923 0.0000 4 7 3.5372 1.1571 0.0005 5 6 4.1842 0.0003 0.0015 6 16 5.9462 0.0004 0.0029 7 6 6.2523 -1.7348 0.0031 8 1 5.4250 -2.4291 0.0021 9 6 7.5565 -2.2094 -0.0017 10 7 8.5642 -1.3637 -0.0009 11 14 7.8810 -4.0490 -0.0093 12 1 7.9637 -4.5313 -1.4113 13 1 9.1627 -4.3284 0.6868 14 1 6.7746 -4.7497 0.6908 15 7 3.5372 -1.1567 -0.0034 16 6 2.2156 -1.1920 0.0014 17 1 -0.3633 -0.0002 -1.0276 18 1 -0.3633 -0.8901 0.5139 19 1 -0.3634 0.8899 0.5138 20 1 1.6937 2.1379 -0.0008 21 1 9.4758 -1.6954 -0.0039 22 1 1.6940 -2.1378 0.0015 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042298043.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:38 Heat of formation + Delta-G solvation = 9.193339 kcal Electronic energy + Delta-G solvation = -9682.397930 eV Core-core repulsion = 7748.419437 eV Total energy + Delta-G solvation = -1933.978493 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 196.037 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.55380 -34.82058 -34.47815 -34.42364 -28.53319 -27.71758 -25.33646 -23.72292 -20.25561 -18.71783 -18.14541 -16.96963 -15.89462 -15.79293 -15.16388 -14.72380 -14.35035 -13.79290 -13.32330 -13.05558 -12.97373 -12.94071 -12.08576 -11.79416 -11.45880 -11.38588 -10.85997 -10.50309 -9.96565 -8.77052 -8.50205 -6.29189 -0.01681 0.37462 1.03689 1.38002 1.40469 1.53893 2.14100 2.80307 2.95835 2.98135 3.66707 3.80509 3.91536 4.16082 4.22126 4.83077 4.94370 5.19430 5.19859 5.48700 5.64716 6.20021 6.27717 6.96246 7.20722 8.59551 Molecular weight = 196.04amu Principal moments of inertia in cm(-1) A = 0.064169 B = 0.010076 C = 0.008750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.240923 B = 2778.189453 C = 3199.283166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.221 4.221 3 C 0.144 3.856 4 N -0.544 5.544 5 C 0.255 3.745 6 S 0.089 5.911 7 C -0.558 4.558 8 H 0.099 0.901 9 C 0.023 3.977 10 N -0.908 5.908 11 Si 1.003 2.997 12 H -0.265 1.265 13 H -0.269 1.269 14 H -0.265 1.265 15 N -0.550 5.550 16 C 0.137 3.863 17 H 0.082 0.918 18 H 0.080 0.920 19 H 0.085 0.915 20 H 0.201 0.799 21 H 0.279 0.721 22 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.941 0.209 -0.010 13.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.232 4.232 3 C -0.026 4.026 4 N -0.263 5.263 5 C -0.117 4.117 6 S 0.331 5.669 7 C -0.706 4.706 8 H 0.117 0.883 9 C -0.182 4.182 10 N -0.543 5.543 11 Si 0.824 3.176 12 H -0.190 1.190 13 H -0.194 1.194 14 H -0.189 1.189 15 N -0.268 5.268 16 C -0.033 4.033 17 H 0.101 0.899 18 H 0.099 0.901 19 H 0.104 0.896 20 H 0.218 0.782 21 H 0.088 0.912 22 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -11.704 1.134 -0.012 11.759 hybrid contribution -1.165 -1.740 -0.024 2.094 sum -12.868 -0.607 -0.036 12.883 Atomic orbital electron populations 1.20591 0.85929 1.04397 1.03464 1.21879 1.00814 0.94195 1.06315 1.23800 0.88604 1.00143 0.90017 1.68534 1.11580 1.28381 1.17772 1.25681 1.03458 0.86598 0.95936 1.83622 0.87183 1.12019 1.84093 1.23593 0.96341 0.91813 1.58894 0.88289 1.26150 0.94171 1.05115 0.92794 1.70054 1.00002 1.37196 1.47090 0.84896 0.78053 0.75662 0.79033 1.19045 1.19359 1.18884 1.68822 1.11461 1.29293 1.17216 1.23760 0.89003 1.00166 0.90321 0.89919 0.90140 0.89583 0.78243 0.91153 0.79481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.35 10.06 71.24 0.72 -0.63 14 2 C -0.22 -6.14 5.92 -19.65 -0.12 -6.25 14 3 C 0.14 4.56 11.00 84.74 0.93 5.50 14 4 N -0.54 -23.67 10.40 -196.42 -2.04 -25.71 14 5 C 0.25 12.71 7.84 180.43 1.41 14.12 14 6 S 0.09 5.00 21.83 -56.49 -1.23 3.76 14 7 C -0.56 -32.86 9.24 67.95 0.63 -32.23 14 8 H 0.10 5.83 6.51 -2.91 -0.02 5.81 14 9 C 0.02 1.31 5.49 84.86 0.47 1.78 14 10 N -0.91 -53.40 13.22 21.64 0.29 -53.11 14 11 Si 1.00 44.04 29.55 68.60 2.03 46.07 14 12 H -0.27 -11.18 7.11 99.48 0.71 -10.47 14 13 H -0.27 -11.16 7.11 99.48 0.71 -10.45 14 14 H -0.26 -11.36 7.11 99.48 0.71 -10.65 14 15 N -0.55 -25.70 8.46 -196.43 -1.66 -27.36 14 16 C 0.14 4.70 11.00 84.74 0.93 5.63 14 17 H 0.08 1.10 8.14 -2.39 -0.02 1.08 14 18 H 0.08 1.06 8.10 -2.38 -0.02 1.04 14 19 H 0.09 1.04 8.10 -2.39 -0.02 1.02 14 20 H 0.20 4.32 8.06 -2.91 -0.02 4.29 14 21 H 0.28 15.09 8.31 -92.70 -0.77 14.32 14 22 H 0.19 4.85 8.06 -2.91 -0.02 4.82 14 Total: -1.00 -71.20 220.61 3.58 -67.63 By element: Atomic # 1 Polarization: -0.42 SS G_CDS: 1.23 Total: 0.81 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: 4.97 Total: -12.09 kcal Atomic # 7 Polarization: -102.76 SS G_CDS: -3.42 Total: -106.18 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 5.00 SS G_CDS: -1.23 Total: 3.76 kcal Total: -71.20 3.58 -67.63 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042298043.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.819 kcal (2) G-P(sol) polarization free energy of solvation -71.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds