Wall clock time and date at job start Sun Mar 29 2020 21:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35456 * 126.77673 * 2 1 4 4 C 1.41381 * 103.98449 * 180.10363 * 3 2 1 5 5 C 1.50704 * 126.79830 * 179.89178 * 4 3 2 6 6 N 1.46898 * 109.47041 * 94.70783 * 5 4 3 7 7 C 1.46906 * 110.99888 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47140 * 179.97438 * 7 6 5 9 9 H 1.08003 * 119.99962 * 359.97438 * 8 7 6 10 10 C 1.37873 * 119.99861 * 180.02562 * 8 7 6 11 11 N 1.31522 * 120.00244 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99980 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46950 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47074 * 119.99839 * 12 10 8 15 15 H 1.48505 * 109.46997 * 239.99833 * 12 10 8 16 16 N 1.30167 * 106.39613 * 359.62451 * 4 3 2 17 17 O 1.20924 * 111.60826 * 0.24607 * 16 4 3 18 18 H 1.09006 * 109.46804 * 180.29839 * 1 2 3 19 19 H 1.09000 * 109.46825 * 300.29458 * 1 2 3 20 20 H 1.08992 * 109.47549 * 60.29840 * 1 2 3 21 21 H 1.08002 * 128.00427 * 359.96319 * 3 2 1 22 22 H 1.08997 * 109.46924 * 334.70695 * 5 4 3 23 23 H 1.08995 * 109.46962 * 214.70849 * 5 4 3 24 24 H 1.00904 * 110.99913 * 303.95016 * 6 5 4 25 25 H 1.09004 * 109.47040 * 299.99934 * 7 6 5 26 26 H 1.09000 * 109.47033 * 59.99886 * 7 6 5 27 27 H 0.96992 * 120.00038 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6213 0.5373 -0.0025 5 6 4.9210 1.3001 -0.0058 6 7 5.4039 1.4508 1.3733 7 6 6.6724 2.1909 1.4091 8 6 7.1351 2.3259 2.8369 9 1 6.5456 1.9045 3.6378 10 6 8.3105 2.9883 3.1209 11 7 9.0281 3.5019 2.1457 12 14 8.8845 3.1551 4.8907 13 1 7.9064 2.4952 5.7925 14 1 10.2130 2.5093 5.0431 15 1 8.9900 4.5938 5.2434 16 7 3.4763 -0.7563 0.0045 17 8 2.3095 -1.0736 0.0059 18 1 -0.3633 -1.0277 0.0054 19 1 -0.3633 0.5184 0.8873 20 1 -0.3634 0.5091 -0.8926 21 1 2.0344 2.1271 -0.0005 22 1 4.7631 2.2850 -0.4452 23 1 5.6607 0.7550 -0.5922 24 1 4.7085 1.8963 1.9532 25 1 7.4240 1.6516 0.8326 26 1 6.5270 3.1820 0.9794 27 1 9.8548 3.9682 2.3456 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044296358.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:31 Heat of formation + Delta-G solvation = 52.728491 kcal Electronic energy + Delta-G solvation = -11682.043750 eV Core-core repulsion = 9443.033307 eV Total energy + Delta-G solvation = -2239.010444 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -44.68810 -35.93694 -33.77516 -33.14095 -31.97970 -27.81422 -27.59689 -24.73879 -22.74613 -21.47414 -19.84495 -17.40600 -17.02628 -16.40582 -15.00458 -14.52410 -14.15504 -13.66823 -13.44935 -13.29515 -13.16541 -12.50103 -12.04547 -11.63210 -11.27276 -10.86562 -10.73178 -10.65225 -10.14023 -9.76046 -9.23289 -9.13186 -8.50390 -7.37920 -6.05004 -4.07013 1.64807 2.47833 3.27810 3.30808 3.37952 3.43680 4.41225 4.50144 4.58601 5.10173 5.24225 5.24867 5.31122 5.39369 5.53413 5.66422 5.79440 6.02981 6.13879 6.30650 7.17123 7.35559 7.74919 8.07845 8.32234 8.52463 8.57767 9.01830 9.57916 11.06223 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.076063 B = 0.006234 C = 0.006076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.026681 B = 4490.748946 C = 4607.533064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.047 4.047 3 C -0.231 4.231 4 C 0.035 3.965 5 C 0.132 3.868 6 N -0.682 5.682 7 C 0.194 3.806 8 C -0.514 4.514 9 H 0.063 0.937 10 C 0.055 3.945 11 N -0.898 5.898 12 Si 0.901 3.099 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.284 1.284 16 N -0.352 5.352 17 O 0.095 5.905 18 H 0.080 0.920 19 H 0.087 0.913 20 H 0.086 0.914 21 H 0.168 0.832 22 H 0.044 0.956 23 H 0.082 0.918 24 H 0.331 0.669 25 H 0.031 0.969 26 H -0.010 1.010 27 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.775 -3.460 -4.812 16.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.111 4.111 3 C -0.253 4.253 4 C -0.125 4.125 5 C 0.002 3.998 6 N -0.314 5.314 7 C 0.068 3.932 8 C -0.553 4.553 9 H 0.081 0.919 10 C -0.146 4.146 11 N -0.537 5.537 12 Si 0.728 3.272 13 H -0.196 1.196 14 H -0.209 1.209 15 H -0.211 1.211 16 N -0.056 5.056 17 O 0.028 5.972 18 H 0.099 0.901 19 H 0.106 0.894 20 H 0.105 0.895 21 H 0.185 0.815 22 H 0.062 0.938 23 H 0.100 0.900 24 H 0.147 0.853 25 H 0.049 0.951 26 H 0.007 0.993 27 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.425 -5.014 -4.837 16.019 hybrid contribution -0.163 1.904 0.707 2.038 sum -14.588 -3.110 -4.130 15.477 Atomic orbital electron populations 1.20269 0.84405 1.04314 1.03783 1.24431 0.96224 0.86583 1.03842 1.22441 0.91724 1.00856 1.10282 1.23720 0.97320 0.89864 1.01569 1.20214 0.89340 0.96145 0.94120 1.60669 1.07433 1.57396 1.05923 1.19611 0.85127 0.90676 0.97836 1.21197 1.06906 1.34746 0.92406 0.91857 1.24993 0.96486 0.95468 0.97643 1.69972 1.14986 1.37317 1.31447 0.86400 0.78661 0.77605 0.84506 1.19636 1.20929 1.21053 1.73855 0.96057 1.16766 1.18882 1.84840 1.11569 1.33205 1.67562 0.90148 0.89427 0.89521 0.81490 0.93831 0.89964 0.85276 0.95114 0.99257 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.45 36.00 0.38 -0.12 15 2 C -0.05 -0.58 7.49 -35.30 -0.26 -0.85 15 3 C -0.23 -3.20 11.06 -39.38 -0.44 -3.63 15 4 C 0.03 0.61 6.84 -82.10 -0.56 0.05 15 5 C 0.13 2.53 6.27 -4.97 -0.03 2.50 15 6 N -0.68 -15.52 6.48 -116.34 -0.75 -16.27 15 7 C 0.19 5.20 5.44 -4.97 -0.03 5.17 15 8 C -0.51 -14.89 9.32 -34.44 -0.32 -15.21 15 9 H 0.06 1.82 7.81 -52.48 -0.41 1.41 15 10 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 11 N -0.90 -27.06 13.29 55.43 0.74 -26.33 15 12 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 15 13 H -0.27 -6.53 7.11 56.52 0.40 -6.13 15 14 H -0.28 -6.86 7.11 56.52 0.40 -6.45 15 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 16 N -0.35 -6.48 12.07 33.42 0.40 -6.07 15 17 O 0.10 1.48 11.20 17.17 0.19 1.67 15 18 H 0.08 0.47 8.14 -51.93 -0.42 0.05 15 19 H 0.09 0.51 8.14 -51.93 -0.42 0.09 15 20 H 0.09 0.47 8.14 -51.93 -0.42 0.04 15 21 H 0.17 1.87 8.06 -52.49 -0.42 1.45 15 22 H 0.04 0.77 8.14 -51.93 -0.42 0.35 15 23 H 0.08 1.62 8.14 -51.93 -0.42 1.20 15 24 H 0.33 7.14 8.72 -39.29 -0.34 6.80 15 25 H 0.03 0.89 8.14 -51.93 -0.42 0.46 15 26 H -0.01 -0.29 8.14 -51.93 -0.42 -0.71 15 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 LS Contribution 246.10 15.07 3.71 3.71 Total: -1.00 -32.35 246.10 -5.36 -37.71 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -3.27 Total: -0.79 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -1.36 Total: -10.58 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 0.39 Total: -48.67 kcal Atomic # 8 Polarization: 1.48 SS G_CDS: 0.19 Total: 1.67 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -32.35 -5.36 -37.71 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044296358.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.439 kcal (2) G-P(sol) polarization free energy of solvation -32.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds