Wall clock time and date at job start Sun Mar 29 2020 21:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41172 * 126.69633 * 2 1 4 4 C 1.36987 * 103.84109 * 180.13418 * 3 2 1 5 5 C 1.47295 * 126.96095 * 179.87305 * 4 3 2 6 6 O 1.21653 * 119.99732 * 359.71099 * 5 4 3 7 7 N 1.34777 * 120.00220 * 179.43743 * 5 4 3 8 8 C 1.36680 * 120.00069 * 180.27692 * 7 5 4 9 9 H 1.08001 * 119.99684 * 359.97438 * 8 7 5 10 10 C 1.39162 * 120.00269 * 179.97438 * 8 7 5 11 11 N 1.31286 * 120.00095 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99595 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.47109 * 90.00171 * 12 10 8 14 14 H 1.48507 * 109.46754 * 209.99910 * 12 10 8 15 15 H 1.48498 * 109.47278 * 329.99741 * 12 10 8 16 16 O 1.34677 * 106.08604 * 359.61397 * 4 3 2 17 17 N 1.20889 * 111.44810 * 0.25666 * 16 4 3 18 18 H 1.09001 * 109.46824 * 270.28484 * 1 2 3 19 19 H 1.08998 * 109.46795 * 30.28252 * 1 2 3 20 20 H 1.08998 * 109.47066 * 150.28559 * 1 2 3 21 21 H 1.08004 * 128.07733 * 0.02562 * 3 2 1 22 22 H 0.97000 * 119.99736 * 0.27066 * 7 5 4 23 23 H 0.97005 * 119.99961 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3506 1.1319 0.0000 4 6 3.6130 0.5999 -0.0031 5 6 4.8862 1.3404 -0.0071 6 8 4.8822 2.5570 -0.0132 7 7 6.0556 0.6704 0.0016 8 6 7.2370 1.3577 0.0037 9 1 7.2334 2.4377 -0.0021 10 6 8.4445 0.6659 0.0132 11 7 9.5793 1.3261 0.0146 12 14 8.4505 -1.2021 0.0239 13 1 8.4586 -1.7050 -1.3733 14 1 9.6614 -1.6890 0.7323 15 1 7.2365 -1.6970 0.7212 16 8 3.4542 -0.7375 0.0040 17 7 2.2848 -1.0438 0.0057 18 1 -0.3633 0.0051 1.0277 19 1 -0.3633 0.8874 -0.5182 20 1 -0.3633 -0.8925 -0.5094 21 1 2.0670 2.1741 0.0004 22 1 6.0587 -0.2996 0.0065 23 1 10.4209 0.8438 0.0216 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044586040.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:37 Heat of formation + Delta-G solvation = 22.315928 kcal Electronic energy + Delta-G solvation = -11822.932746 eV Core-core repulsion = 9446.770420 eV Total energy + Delta-G solvation = -2376.162326 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 196.063 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.49257 -38.37682 -34.72123 -34.15393 -32.07077 -31.30930 -28.50733 -25.74371 -22.83146 -22.06646 -19.44862 -18.83872 -17.30288 -17.18261 -15.46914 -15.17001 -13.97388 -13.71437 -13.53180 -13.29239 -13.10101 -12.85049 -12.64001 -12.27594 -11.37047 -11.04405 -10.72239 -10.22219 -9.88106 -9.79171 -9.15600 -9.03939 -8.47468 -6.62216 -4.05154 1.36928 2.39828 2.97313 3.00464 3.05875 3.34626 3.88003 3.90349 4.30091 4.39192 4.96929 5.05262 5.41086 5.47233 5.55501 5.73523 5.86949 5.99942 6.34433 7.24679 7.82158 8.23441 8.49708 8.64278 9.10668 9.50165 10.47686 Molecular weight = 196.06amu Principal moments of inertia in cm(-1) A = 0.062525 B = 0.009848 C = 0.008547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.715802 B = 2842.663667 C = 3275.226558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.008 3.992 3 C -0.195 4.195 4 C -0.035 4.035 5 C 0.500 3.500 6 O -0.560 6.560 7 N -0.546 5.546 8 C -0.302 4.302 9 H 0.129 0.871 10 C 0.049 3.951 11 N -0.851 5.851 12 Si 0.878 3.122 13 H -0.264 1.264 14 H -0.270 1.270 15 H -0.261 1.261 16 O 0.093 5.907 17 N -0.370 5.370 18 H 0.078 0.922 19 H 0.080 0.920 20 H 0.073 0.927 21 H 0.175 0.825 22 H 0.379 0.621 23 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.293 -5.200 0.000 12.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.150 4.150 3 C -0.219 4.219 4 C -0.101 4.101 5 C 0.286 3.714 6 O -0.445 6.445 7 N -0.181 5.181 8 C -0.432 4.432 9 H 0.146 0.854 10 C -0.158 4.158 11 N -0.488 5.488 12 Si 0.702 3.298 13 H -0.189 1.189 14 H -0.195 1.195 15 H -0.186 1.186 16 O 0.027 5.973 17 N -0.077 5.077 18 H 0.096 0.904 19 H 0.099 0.901 20 H 0.092 0.908 21 H 0.193 0.807 22 H 0.213 0.787 23 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.228 -5.699 0.003 12.592 hybrid contribution 0.147 -0.586 0.025 0.605 sum -11.081 -6.285 0.029 12.739 Atomic orbital electron populations 1.20116 0.86003 1.03526 1.03143 1.23520 0.98854 0.88967 1.03614 1.22595 0.90079 1.01077 1.08135 1.24970 0.98553 0.82681 1.03917 1.15913 0.80276 0.86407 0.88790 1.90731 1.84731 1.11412 1.57611 1.42168 1.05959 1.08420 1.61568 1.19588 0.80597 0.95464 1.47503 0.85388 1.25187 0.94809 0.99425 0.96401 1.69561 0.97743 1.36816 1.44673 0.86658 0.79300 0.84100 0.79722 1.18866 1.19469 1.18608 1.84927 1.21209 1.23214 1.67924 1.73655 0.89506 1.24582 1.19972 0.90368 0.90073 0.90783 0.80718 0.78672 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.47 36.01 0.38 -0.37 14 2 C 0.01 0.13 7.31 -82.18 -0.60 -0.47 14 3 C -0.20 -3.38 10.92 -38.92 -0.42 -3.80 14 4 C -0.03 -0.70 7.29 -36.35 -0.27 -0.97 14 5 C 0.50 11.91 7.76 -12.58 -0.10 11.81 14 6 O -0.56 -15.11 16.49 5.23 0.09 -15.02 14 7 N -0.55 -13.15 5.08 -12.01 -0.06 -13.21 14 8 C -0.30 -8.22 10.16 -15.05 -0.15 -8.38 14 9 H 0.13 3.91 7.38 -52.49 -0.39 3.52 14 10 C 0.05 1.29 5.50 -17.44 -0.10 1.19 14 11 N -0.85 -23.30 13.95 55.51 0.77 -22.53 14 12 Si 0.88 18.59 27.74 -169.99 -4.71 13.87 14 13 H -0.26 -5.47 7.11 56.52 0.40 -5.07 14 14 H -0.27 -5.64 7.11 56.52 0.40 -5.23 14 15 H -0.26 -5.20 6.52 56.52 0.37 -4.83 14 16 O 0.09 1.79 11.04 15.45 0.17 1.96 14 17 N -0.37 -6.63 12.04 33.53 0.40 -6.23 14 18 H 0.08 0.72 8.14 -51.93 -0.42 0.29 14 19 H 0.08 0.70 8.14 -51.93 -0.42 0.27 14 20 H 0.07 0.72 8.14 -51.93 -0.42 0.30 14 21 H 0.18 2.71 8.06 -52.48 -0.42 2.29 14 22 H 0.38 8.22 5.58 -40.82 -0.23 7.99 14 23 H 0.28 7.04 8.31 -40.82 -0.34 6.70 14 LS Contribution 220.23 15.07 3.32 3.32 Total: -1.00 -29.84 220.23 -2.76 -32.59 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -1.47 Total: 6.22 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -1.26 Total: -0.97 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 1.12 Total: -41.97 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.26 Total: -13.06 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -4.71 Total: 13.87 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -29.84 -2.76 -32.59 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044586040.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.907 kcal (2) G-P(sol) polarization free energy of solvation -29.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds