Wall clock time and date at job start Sun Mar 29 2020 22:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00146 * 2 1 4 4 H 1.48502 * 109.47256 * 269.99993 * 3 2 1 5 5 H 1.48501 * 109.47354 * 29.99956 * 3 2 1 6 6 H 1.48503 * 109.47283 * 150.00228 * 3 2 1 7 7 C 1.37879 * 119.99765 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99823 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00251 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47629 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00606 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99487 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00203 * 180.02562 * 11 10 9 14 14 C 1.54894 * 110.48422 * 63.24037 * 13 11 10 15 15 C 1.55238 * 102.58338 * 156.67616 * 14 13 11 16 16 C 1.54266 * 104.23333 * 322.08174 * 15 14 13 17 17 C 1.53869 * 106.59800 * 23.61579 * 16 15 14 18 18 H 0.96998 * 119.99809 * 0.02562 * 1 2 3 19 19 H 1.09005 * 109.47247 * 59.99655 * 9 7 2 20 20 H 1.08996 * 109.47401 * 299.99782 * 9 7 2 21 21 H 0.97005 * 119.99133 * 0.02562 * 10 9 7 22 22 H 1.09002 * 110.43350 * 300.69816 * 13 11 10 23 23 H 1.08996 * 110.75388 * 275.05970 * 14 13 11 24 24 H 1.08993 * 110.76071 * 38.44196 * 14 13 11 25 25 H 1.09005 * 110.46917 * 203.39204 * 15 14 13 26 26 H 1.09007 * 110.58541 * 80.83124 * 15 14 13 27 27 H 1.08999 * 110.03060 * 264.32313 * 16 15 14 28 28 H 1.09006 * 110.06829 * 142.91691 * 16 15 14 29 29 H 1.09001 * 110.02983 * 240.71432 * 17 16 15 30 30 H 1.08995 * 110.03881 * 119.28625 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5613 -5.1050 0.0000 13 6 2.7329 -6.0288 0.0006 14 6 3.5808 -6.0165 1.2968 15 6 4.0392 -7.4949 1.4152 16 6 2.8164 -8.3099 0.9458 17 6 1.9859 -7.3778 0.0463 18 1 -0.4850 0.8400 -0.0004 19 1 0.6246 -2.5571 -0.8897 20 1 0.6240 -2.5567 0.8903 21 1 3.1566 -3.4354 0.0009 22 1 3.3772 -5.9791 -0.8772 23 1 4.4376 -5.3511 1.1916 24 1 2.9715 -5.7310 2.1543 25 1 4.2843 -7.7364 2.4496 26 1 4.8952 -7.6838 0.7673 27 1 2.2247 -8.6241 1.8056 28 1 3.1432 -9.1819 0.3791 29 1 0.9910 -7.2395 0.4696 30 1 1.9103 -7.7969 -0.9570 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048322344.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:29 Heat of formation + Delta-G solvation = -90.071302 kcal Electronic energy + Delta-G solvation = -12346.881372 eV Core-core repulsion = 10139.793097 eV Total energy + Delta-G solvation = -2207.088275 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.91884 -38.02781 -36.15662 -34.36743 -30.73316 -29.53497 -28.74353 -24.93546 -22.64194 -21.28391 -20.66706 -18.97020 -17.76196 -17.10738 -16.58309 -16.19444 -15.86909 -15.11816 -14.47704 -14.26121 -14.06719 -13.79350 -13.02074 -12.82666 -12.69736 -12.27184 -12.10487 -12.02231 -11.93169 -11.66235 -11.49680 -11.25331 -10.81791 -10.65096 -9.84470 -8.30614 -6.47825 1.42462 1.45260 1.56607 1.76056 2.32071 2.60836 3.04152 3.58377 3.71176 3.90055 4.33214 4.50372 4.56496 4.62938 4.63557 4.84145 4.99810 5.08999 5.13778 5.20651 5.24884 5.31031 5.40989 5.48373 5.52242 5.69554 5.83347 6.63427 6.90566 7.21818 7.48996 8.81885 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.071133 B = 0.007166 C = 0.006671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.532409 B = 3906.436259 C = 4196.181351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.254 1.254 7 C -0.557 4.557 8 H 0.085 0.915 9 C 0.264 3.736 10 N -0.706 5.706 11 C 0.497 3.503 12 O -0.608 6.608 13 C -0.107 4.107 14 C -0.114 4.114 15 C -0.114 4.114 16 C -0.119 4.119 17 C -0.115 4.115 18 H 0.269 0.731 19 H -0.015 1.015 20 H -0.015 1.015 21 H 0.408 0.592 22 H 0.123 0.877 23 H 0.092 0.908 24 H 0.051 0.949 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.048 0.952 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.894 -11.918 1.453 16.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.178 1.178 7 C -0.594 4.594 8 H 0.103 0.897 9 C 0.141 3.859 10 N -0.355 5.355 11 C 0.285 3.715 12 O -0.490 6.490 13 C -0.128 4.128 14 C -0.152 4.152 15 C -0.151 4.151 16 C -0.157 4.157 17 C -0.154 4.154 18 H 0.078 0.922 19 H 0.003 0.997 20 H 0.003 0.997 21 H 0.244 0.756 22 H 0.141 0.859 23 H 0.110 0.890 24 H 0.069 0.931 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.079 0.921 28 H 0.103 0.897 29 H 0.067 0.933 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.901 -11.947 1.456 16.238 hybrid contribution -0.192 1.139 -0.088 1.158 sum 10.709 -10.808 1.368 15.277 Atomic orbital electron populations 1.70146 1.08380 1.28622 1.49967 1.26113 0.95794 1.04054 0.93762 0.85118 0.78477 0.76730 0.78655 1.19514 1.20924 1.17797 1.21626 0.94332 0.90529 1.52959 0.89723 1.18545 0.88810 0.84615 0.93884 1.46212 1.11094 1.05560 1.72601 1.21555 0.89802 0.85177 0.74984 1.90604 1.19818 1.85562 1.53028 1.22252 0.96166 0.91907 1.02464 1.22587 0.98803 0.99360 0.94416 1.22404 0.97886 0.92307 1.02491 1.22140 0.96405 0.98199 0.98951 1.22080 0.99003 0.93129 1.01144 0.92215 0.99692 0.99705 0.75613 0.85936 0.88989 0.93059 0.90277 0.89332 0.92061 0.89719 0.93335 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.16 13.29 21.45 0.28 -56.87 16 2 C 0.00 0.12 5.46 84.66 0.46 0.59 16 3 Si 0.99 42.60 29.54 68.60 2.03 44.62 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.56 -30.83 9.28 25.60 0.24 -30.59 16 8 H 0.08 4.21 7.60 -2.91 -0.02 4.19 16 9 C 0.26 14.98 5.43 85.63 0.46 15.45 16 10 N -0.71 -30.96 5.51 -466.80 -2.57 -33.53 16 11 C 0.50 20.89 7.14 87.66 0.63 21.52 16 12 O -0.61 -31.76 15.44 -3.03 -0.05 -31.81 16 13 C -0.11 -3.02 3.24 -10.46 -0.03 -3.05 16 14 C -0.11 -2.61 6.32 32.01 0.20 -2.41 16 15 C -0.11 -1.91 6.84 31.79 0.22 -1.70 16 16 C -0.12 -2.30 6.80 31.32 0.21 -2.09 16 17 C -0.12 -3.11 6.17 31.32 0.19 -2.92 16 18 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 19 H -0.01 -0.95 8.14 -2.38 -0.02 -0.97 16 20 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 21 H 0.41 14.73 8.32 -92.70 -0.77 13.96 16 22 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 23 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.05 1.40 8.05 -2.39 -0.02 1.38 16 25 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 26 H 0.09 1.15 8.14 -2.38 -0.02 1.14 16 27 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.05 1.65 6.88 -2.39 -0.02 1.64 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -71.98 254.20 2.62 -69.36 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.35 Total: 13.43 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: 2.58 Total: -5.21 kcal Atomic # 7 Polarization: -88.11 SS G_CDS: -2.29 Total: -90.40 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -0.05 Total: -31.81 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -71.98 2.62 -69.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048322344.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.710 kcal (2) G-P(sol) polarization free energy of solvation -71.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds