Wall clock time and date at job start Sun Mar 29 2020 22:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47107 * 180.02562 * 9 7 2 11 11 C 1.46904 * 111.00029 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46950 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.70612 * 60.00242 * 12 11 10 14 14 C 1.53507 * 109.70621 * 180.58577 * 12 11 10 15 15 C 1.53242 * 108.16872 * 182.03277 * 14 12 11 16 16 C 1.50438 * 109.47369 * 313.25225 * 15 14 12 17 17 C 1.30685 * 122.49779 * 17.45749 * 16 15 14 18 18 O 1.35141 * 123.34095 * 359.53958 * 17 16 15 19 19 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 21 21 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 22 22 H 1.00902 * 111.00582 * 303.95889 * 10 9 7 23 23 H 1.08995 * 109.47167 * 300.00240 * 11 10 9 24 24 H 1.09003 * 109.46442 * 60.00214 * 11 10 9 25 25 H 1.09001 * 109.72297 * 301.75157 * 14 12 11 26 26 H 1.08994 * 109.72491 * 62.42246 * 14 12 11 27 27 H 1.09005 * 109.47657 * 193.23787 * 15 14 12 28 28 H 1.09002 * 109.44129 * 73.24593 * 15 14 12 29 29 H 1.08001 * 118.75469 * 197.43728 * 16 15 14 30 30 H 1.07994 * 118.33187 * 179.57089 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5054 -4.9071 0.0001 12 6 2.5304 -6.0430 0.0007 13 1 3.1574 -5.9717 0.8894 14 6 1.8042 -7.3954 -0.0134 15 6 2.8598 -8.5051 0.0393 16 6 3.9489 -8.2088 -0.9553 17 6 4.1238 -7.0214 -1.4722 18 8 3.3446 -5.9587 -1.1723 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5568 -0.8903 21 1 0.6247 -2.5571 0.8897 22 1 2.8407 -3.5487 -0.7818 23 1 0.8808 -4.9813 0.8902 24 1 0.8803 -4.9817 -0.8898 25 1 1.1479 -7.4696 0.8536 26 1 1.2187 -7.4890 -0.9280 27 1 2.3951 -9.4605 -0.2044 28 1 3.2859 -8.5532 1.0414 29 1 4.6118 -9.0078 -1.2533 30 1 4.9317 -6.8823 -2.1752 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050267774.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:49 Heat of formation + Delta-G solvation = -57.180253 kcal Electronic energy + Delta-G solvation = -12249.274402 eV Core-core repulsion = 10043.612390 eV Total energy + Delta-G solvation = -2205.662012 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.03482 -37.12425 -34.88041 -34.67697 -32.57738 -29.32223 -27.08779 -24.77303 -23.61981 -22.96183 -19.82598 -18.68383 -17.75457 -16.92311 -16.69352 -16.44543 -15.44381 -15.21575 -14.70929 -14.62362 -13.94218 -13.80758 -13.66990 -13.09278 -12.92701 -12.66097 -12.60054 -12.10614 -11.76133 -11.67152 -11.43760 -11.09221 -10.67966 -9.28346 -9.17671 -8.23834 -6.35276 1.41402 1.42170 1.43787 1.56647 2.40102 2.54726 3.09435 3.39240 3.78267 3.96293 4.11584 4.18852 4.33931 4.51600 4.63640 4.69251 4.80608 4.88039 5.00024 5.05575 5.21796 5.23764 5.42530 5.59651 5.70341 5.99460 6.40636 6.65105 6.76215 6.86437 7.35746 8.88279 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.078811 B = 0.006466 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 355.196007 B = 4329.274516 C = 4579.408769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.976 3.024 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.538 4.538 8 H 0.063 0.937 9 C 0.206 3.794 10 N -0.688 5.688 11 C 0.066 3.934 12 C 0.098 3.902 13 H 0.074 0.926 14 C -0.150 4.150 15 C -0.081 4.081 16 C -0.286 4.286 17 C 0.035 3.965 18 O -0.344 6.344 19 H 0.266 0.734 20 H -0.040 1.040 21 H 0.005 0.995 22 H 0.338 0.662 23 H 0.087 0.913 24 H 0.020 0.980 25 H 0.095 0.905 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.139 0.861 30 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.072 -15.383 -0.949 16.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.800 3.200 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.576 4.576 8 H 0.081 0.919 9 C 0.078 3.922 10 N -0.318 5.318 11 C -0.064 4.064 12 C 0.042 3.958 13 H 0.092 0.908 14 C -0.188 4.188 15 C -0.118 4.118 16 C -0.306 4.306 17 C -0.027 4.027 18 O -0.259 6.259 19 H 0.075 0.925 20 H -0.022 1.022 21 H 0.023 0.977 22 H 0.155 0.845 23 H 0.105 0.895 24 H 0.039 0.961 25 H 0.114 0.886 26 H 0.087 0.913 27 H 0.110 0.890 28 H 0.095 0.905 29 H 0.157 0.843 30 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 5.978 -15.083 -0.358 16.229 hybrid contribution -0.311 0.706 -0.829 1.132 sum 5.668 -14.377 -1.187 15.500 Atomic orbital electron populations 1.70095 1.07826 1.28054 1.51499 1.25982 0.95838 1.03477 0.94428 0.85231 0.78833 0.78023 0.77870 1.18751 1.20180 1.20123 1.21570 0.93797 0.91467 1.50745 0.91891 1.19249 0.90660 0.88942 0.93324 1.60565 1.20367 1.01431 1.49482 1.22039 0.94882 0.88847 1.00603 1.22528 0.91574 0.95000 0.86725 0.90842 1.22241 0.98898 0.93729 1.03971 1.20398 0.94095 0.98572 0.98718 1.22782 1.04197 0.97464 1.06110 1.22467 0.94178 0.86518 0.99586 1.85909 1.55113 1.40380 1.44482 0.92512 1.02245 0.97714 0.84526 0.89495 0.96132 0.88621 0.91346 0.88976 0.90483 0.84335 0.81067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.46 13.29 21.45 0.28 -57.17 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.98 45.12 29.54 68.60 2.03 47.15 16 4 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 7 C -0.54 -31.82 9.32 25.60 0.24 -31.58 16 8 H 0.06 3.65 7.81 -2.91 -0.02 3.62 16 9 C 0.21 11.53 5.44 85.56 0.47 12.00 16 10 N -0.69 -31.78 6.49 -517.92 -3.36 -35.14 16 11 C 0.07 2.46 5.44 86.30 0.47 2.93 16 12 C 0.10 2.98 3.12 30.76 0.10 3.07 16 13 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 14 C -0.15 -3.50 5.55 30.85 0.17 -3.33 16 15 C -0.08 -1.57 6.23 29.85 0.19 -1.38 16 16 C -0.29 -5.94 9.97 25.89 0.26 -5.68 16 17 C 0.03 0.85 10.88 68.10 0.74 1.59 16 18 O -0.34 -11.04 9.42 -84.18 -0.79 -11.83 16 19 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 20 H -0.04 -2.41 8.14 -2.39 -0.02 -2.43 16 21 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 22 H 0.34 15.51 8.15 -89.69 -0.73 14.78 16 23 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 24 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 30 H 0.17 3.29 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -66.20 255.12 1.62 -64.57 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.37 Total: 14.28 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: 3.09 Total: -21.86 kcal Atomic # 7 Polarization: -89.23 SS G_CDS: -3.08 Total: -92.31 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -0.79 Total: -11.83 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -66.20 1.62 -64.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050267774.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.395 kcal (2) G-P(sol) polarization free energy of solvation -66.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds