Wall clock time and date at job start Sun Mar 29 2020 21:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00270 * 2 1 4 4 H 1.48502 * 109.47211 * 269.99776 * 3 2 1 5 5 H 1.48501 * 109.47300 * 29.99775 * 3 2 1 6 6 H 1.48497 * 109.47613 * 150.00024 * 3 2 1 7 7 C 1.37881 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00088 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99767 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46923 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99858 * 180.02562 * 10 9 7 12 12 O 1.21503 * 119.99892 * 359.97438 * 11 10 9 13 13 C 1.48329 * 119.99999 * 180.27206 * 11 10 9 14 14 C 1.42268 * 126.93781 * 179.43261 * 13 11 10 15 15 C 1.35318 * 103.92043 * 179.85802 * 14 13 11 16 16 O 1.34013 * 106.67050 * 0.40002 * 15 14 13 17 17 N 1.20905 * 111.83953 * 359.72964 * 16 15 14 18 18 H 0.97000 * 119.99613 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.47477 * 59.99643 * 9 7 2 20 20 H 1.08997 * 109.47150 * 299.99538 * 9 7 2 21 21 H 0.96991 * 120.00424 * 359.97438 * 10 9 7 22 22 H 1.08006 * 128.04186 * 0.02562 * 14 13 11 23 23 H 1.08001 * 126.66415 * 180.13247 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0000 12 8 0.5592 -5.1054 0.0000 13 6 2.7177 -6.0108 0.0061 14 6 2.4089 -7.3995 0.0177 15 6 3.6204 -8.0024 0.0158 16 8 4.5365 -7.0243 0.0130 17 7 4.0249 -5.9289 0.0077 18 1 -0.4849 0.8401 -0.0004 19 1 0.6247 -2.5571 -0.8896 20 1 0.6241 -2.5567 0.8903 21 1 3.1567 -3.4355 0.0002 22 1 1.4341 -7.8646 0.0235 23 1 3.8118 -9.0653 0.0205 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054156784.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:28 Heat of formation + Delta-G solvation = -5.346870 kcal Electronic energy + Delta-G solvation = -11600.061875 eV Core-core repulsion = 9222.700000 eV Total energy + Delta-G solvation = -2377.361875 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 196.063 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -46.12508 -40.58005 -36.35168 -35.05150 -34.40488 -32.78094 -29.63059 -26.24778 -24.18913 -23.88217 -21.56080 -19.84150 -18.80200 -18.52163 -17.57918 -17.13912 -16.25532 -16.22252 -15.39468 -14.68334 -14.20231 -14.11524 -14.09329 -13.03164 -12.75858 -12.69908 -12.29585 -11.57920 -11.49695 -11.37210 -10.87636 -10.70393 -10.04989 -8.34921 -6.52353 0.12288 0.82802 1.40628 1.43394 1.54878 2.00942 2.07761 2.34336 2.44547 2.98225 2.99723 3.76700 4.04794 4.28927 4.69604 4.97616 5.01987 5.11910 5.29034 5.52251 5.74311 6.51602 6.60162 7.02907 7.13260 7.22814 8.77238 Molecular weight = 196.06amu Principal moments of inertia in cm(-1) A = 0.073336 B = 0.007538 C = 0.006861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.713308 B = 3713.535422 C = 4080.097442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.988 3.012 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.259 1.259 7 C -0.563 4.563 8 H 0.079 0.921 9 C 0.265 3.735 10 N -0.693 5.693 11 C 0.576 3.424 12 O -0.577 6.577 13 C -0.058 4.058 14 C -0.204 4.204 15 C -0.022 4.022 16 O 0.136 5.864 17 N -0.353 5.353 18 H 0.271 0.729 19 H -0.002 1.002 20 H -0.002 1.002 21 H 0.408 0.592 22 H 0.191 0.809 23 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.792 -14.319 0.044 17.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.193 4.193 3 Si 0.811 3.189 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.183 1.183 7 C -0.601 4.601 8 H 0.097 0.903 9 C 0.143 3.857 10 N -0.341 5.341 11 C 0.361 3.639 12 O -0.457 6.457 13 C -0.215 4.215 14 C -0.227 4.227 15 C -0.102 4.102 16 O 0.057 5.943 17 N -0.051 5.051 18 H 0.080 0.920 19 H 0.016 0.984 20 H 0.016 0.984 21 H 0.243 0.757 22 H 0.208 0.792 23 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges 9.575 -13.206 0.046 16.312 hybrid contribution -0.579 0.539 -0.013 0.791 sum 8.996 -12.668 0.033 15.537 Atomic orbital electron populations 1.70119 1.08132 1.28826 1.49379 1.26066 0.95889 1.03858 0.93532 0.85107 0.78367 0.76714 0.78740 1.19402 1.20410 1.18282 1.21551 0.94157 0.90562 1.53800 0.90319 1.18733 0.88436 0.83604 0.94963 1.46206 1.11696 1.05294 1.70950 1.17559 0.86877 0.82502 0.76951 1.90717 1.16927 1.85101 1.52933 1.23545 0.90983 0.96695 1.10313 1.23070 1.02971 0.89601 1.07026 1.27031 0.85092 0.98161 0.99925 1.84756 1.35134 1.10209 1.64228 1.74206 1.09640 1.04766 1.16506 0.91965 0.98430 0.98403 0.75693 0.79203 0.69784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.28 13.29 21.45 0.28 -55.99 14 2 C 0.01 0.38 5.46 84.66 0.46 0.84 14 3 Si 0.99 43.24 29.54 68.60 2.03 45.27 14 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 14 5 H -0.28 -11.90 7.11 99.48 0.71 -11.20 14 6 H -0.26 -10.71 7.11 99.48 0.71 -10.00 14 7 C -0.56 -31.97 9.28 25.60 0.24 -31.73 14 8 H 0.08 4.14 7.60 -2.91 -0.02 4.12 14 9 C 0.26 15.18 5.43 85.63 0.46 15.64 14 10 N -0.69 -33.07 5.55 -469.23 -2.60 -35.68 14 11 C 0.58 26.14 7.85 86.93 0.68 26.82 14 12 O -0.58 -29.98 16.95 -3.73 -0.06 -30.05 14 13 C -0.06 -2.01 7.19 42.96 0.31 -1.70 14 14 C -0.20 -4.81 10.99 22.60 0.25 -4.56 14 15 C -0.02 -0.30 12.28 67.15 0.82 0.52 14 16 O 0.14 2.93 11.18 71.91 0.80 3.73 14 17 N -0.35 -10.85 11.84 -49.52 -0.59 -11.44 14 18 H 0.27 15.28 8.31 -92.71 -0.77 14.51 14 19 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 14 20 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 14 21 H 0.41 17.56 8.08 -92.72 -0.75 16.81 14 22 H 0.19 3.93 8.06 -2.91 -0.02 3.91 14 23 H 0.29 -0.03 8.06 -2.91 -0.02 -0.05 14 Total: -1.00 -74.72 224.52 3.58 -71.14 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 0.49 Total: 7.18 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 3.23 Total: 5.84 kcal Atomic # 7 Polarization: -100.21 SS G_CDS: -2.90 Total: -103.11 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: 0.74 Total: -26.31 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -74.72 3.58 -71.14 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054156784.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.789 kcal (2) G-P(sol) polarization free energy of solvation -74.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds