Wall clock time and date at job start Sun Mar 29 2020 21:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 N 1.46500 * 109.46766 * 120.00216 * 2 1 3 5 5 C 1.36932 * 119.99574 * 274.99594 * 4 2 1 6 6 H 1.07999 * 120.00362 * 0.02562 * 5 4 2 7 7 C 1.38817 * 119.99912 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99735 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00443 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46773 * 59.99907 * 9 7 5 11 11 H 1.48494 * 109.47470 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47195 * 300.00195 * 9 7 5 13 13 C 1.50706 * 109.46925 * 239.99957 * 2 1 3 14 14 C 1.38427 * 122.53754 * 100.00579 * 13 2 1 15 15 C 1.33387 * 114.91911 * 179.97438 * 14 13 2 16 16 S 1.75881 * 109.59343 * 0.02562 * 15 14 13 17 17 C 1.33379 * 122.53973 * 279.70675 * 13 2 1 18 18 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 19 19 H 1.08992 * 109.47060 * 300.00030 * 1 2 3 20 20 H 1.09004 * 109.46930 * 59.99944 * 1 2 3 21 21 H 0.96998 * 119.99878 * 95.00286 * 4 2 1 22 22 H 0.97005 * 119.99807 * 180.02562 * 8 7 5 23 23 H 1.07999 * 122.53706 * 359.94906 * 14 13 2 24 24 H 1.08000 * 125.20430 * 179.97438 * 15 14 13 25 25 H 1.08005 * 125.20578 * 0.03194 * 17 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1490 -0.0075 2.3757 6 1 1.8919 1.0403 2.4243 7 6 2.6122 -0.6618 3.5090 8 7 2.9261 -1.9386 3.4497 9 14 2.7900 0.2699 5.1183 10 1 1.4672 0.8057 5.5287 11 1 3.3001 -0.6482 6.1681 12 1 3.7444 1.3930 4.9373 13 6 2.0323 -0.7105 -1.2305 14 6 2.4716 -0.0324 -2.3545 15 6 2.8838 -0.8116 -3.3556 16 16 2.7234 -2.5008 -2.8927 17 6 2.0927 -2.0401 -1.3169 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 2.2490 -1.6318 1.1526 22 1 3.2494 -2.3959 4.2417 23 1 2.4796 1.0458 -2.4163 24 1 3.2580 -0.4591 -4.3055 25 1 1.7970 -2.7286 -0.5391 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061363368.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:54 Heat of formation + Delta-G solvation = 21.840490 kcal Electronic energy + Delta-G solvation = -10252.377778 eV Core-core repulsion = 8357.062139 eV Total energy + Delta-G solvation = -1895.315639 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.58560 -36.32792 -33.70168 -30.50806 -29.64475 -26.07272 -25.22711 -22.05429 -19.76678 -19.33904 -18.04594 -16.93276 -16.07050 -15.32833 -14.87906 -14.63323 -13.84961 -13.62976 -13.53205 -13.20259 -12.98969 -12.73127 -12.47593 -12.28695 -12.07183 -11.69074 -11.40274 -10.98915 -9.62407 -9.21374 -9.01222 -7.93557 -5.22269 0.18857 0.84607 1.14537 1.47760 1.51138 1.57025 1.88765 2.57765 3.40816 3.93045 4.15347 4.24546 4.48953 4.61547 4.78000 4.80781 5.03224 5.05406 5.27409 5.44474 5.49689 5.57304 5.75469 6.28509 7.34388 8.09471 8.33980 9.30195 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.058848 B = 0.009010 C = 0.008439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.684688 B = 3106.929496 C = 3317.006168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.219 3.781 3 H 0.055 0.945 4 N -0.735 5.735 5 C -0.241 4.241 6 H 0.079 0.921 7 C -0.077 4.077 8 N -0.973 5.973 9 Si 0.975 3.025 10 H -0.277 1.277 11 H -0.297 1.297 12 H -0.277 1.277 13 C -0.105 4.105 14 C -0.140 4.140 15 C -0.204 4.204 16 S 0.097 5.903 17 C -0.223 4.223 18 H 0.038 0.962 19 H 0.043 0.957 20 H 0.070 0.930 21 H 0.373 0.627 22 H 0.250 0.750 23 H 0.157 0.843 24 H 0.196 0.804 25 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.724 2.653 -13.336 13.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.108 3.892 3 H 0.073 0.927 4 N -0.376 5.376 5 C -0.373 4.373 6 H 0.096 0.904 7 C -0.269 4.269 8 N -0.624 5.624 9 Si 0.804 3.196 10 H -0.203 1.203 11 H -0.223 1.223 12 H -0.204 1.204 13 C -0.118 4.118 14 C -0.170 4.170 15 C -0.339 4.339 16 S 0.360 5.640 17 C -0.358 4.358 18 H 0.057 0.943 19 H 0.062 0.938 20 H 0.089 0.911 21 H 0.205 0.795 22 H 0.059 0.941 23 H 0.174 0.826 24 H 0.213 0.787 25 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.413 1.409 -13.948 14.090 hybrid contribution -0.089 1.066 1.940 2.215 sum -1.502 2.475 -12.008 12.352 Atomic orbital electron populations 1.22238 0.96739 1.00795 1.00901 1.19116 0.92860 0.94350 0.82824 0.92684 1.42712 1.78552 1.10351 1.05998 1.19640 1.35016 0.94393 0.88202 0.90359 1.25570 1.02885 0.96911 1.01547 1.69826 1.52664 1.10358 1.29503 0.85191 0.78013 0.77267 0.79177 1.20290 1.22331 1.20356 1.19411 1.01634 0.93444 0.97319 1.20234 1.02297 1.02186 0.92323 1.25909 1.08451 0.94913 1.04632 1.83853 1.63599 1.08244 1.08345 1.25390 1.09882 0.99178 1.01394 0.94263 0.93763 0.91145 0.79453 0.94088 0.82559 0.78666 0.83807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.38 9.47 71.98 0.68 -4.69 15 2 C 0.22 8.99 3.19 44.25 0.14 9.13 15 3 H 0.06 2.24 8.02 -2.39 -0.02 2.22 15 4 N -0.74 -38.13 5.09 -326.49 -1.66 -39.79 15 5 C -0.24 -13.56 9.93 84.04 0.83 -12.73 15 6 H 0.08 4.19 7.83 -2.91 -0.02 4.16 15 7 C -0.08 -4.49 5.50 84.86 0.47 -4.03 15 8 N -0.97 -60.60 13.06 21.65 0.28 -60.31 15 9 Si 0.97 46.58 29.55 68.60 2.03 48.61 15 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 15 11 H -0.30 -14.34 7.11 99.48 0.71 -13.63 15 12 H -0.28 -12.74 7.11 99.48 0.71 -12.04 15 13 C -0.11 -3.77 4.86 -20.92 -0.10 -3.87 15 14 C -0.14 -4.02 9.95 21.22 0.21 -3.81 15 15 C -0.20 -4.97 11.23 66.72 0.75 -4.22 15 16 S 0.10 2.64 23.34 -56.49 -1.32 1.32 15 17 C -0.22 -7.96 10.21 66.72 0.68 -7.28 15 18 H 0.04 1.47 8.14 -2.39 -0.02 1.45 15 19 H 0.04 1.70 8.14 -2.39 -0.02 1.68 15 20 H 0.07 2.11 8.14 -2.38 -0.02 2.09 15 21 H 0.37 20.74 6.39 -92.71 -0.59 20.14 15 22 H 0.25 15.15 8.31 -92.70 -0.77 14.38 15 23 H 0.16 3.78 8.06 -2.91 -0.02 3.75 15 24 H 0.20 3.23 8.06 -2.91 -0.02 3.21 15 25 H 0.14 5.62 7.32 -2.91 -0.02 5.60 15 Total: -1.00 -64.23 235.10 3.58 -60.64 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.59 Total: 21.03 kcal Atomic # 6 Polarization: -35.17 SS G_CDS: 3.66 Total: -31.50 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -1.38 Total: -100.11 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -1.32 Total: 1.32 kcal Total: -64.23 3.58 -60.64 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061363368.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.485 kcal (2) G-P(sol) polarization free energy of solvation -64.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds