Wall clock time and date at job start Sun Mar 29 2020 21:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36848 * 119.69856 * 2 1 4 4 C 1.35120 * 119.66687 * 180.02562 * 3 2 1 5 5 C 1.41427 * 119.12236 * 0.27489 * 4 3 2 6 6 O 1.21806 * 120.30084 * 179.70299 * 5 4 3 7 7 N 1.34832 * 119.40480 * 359.46657 * 5 4 3 8 8 C 1.37288 * 119.86076 * 180.25534 * 7 5 4 9 9 H 1.08006 * 119.99430 * 220.65756 * 8 7 5 10 10 C 1.38992 * 120.00455 * 40.65280 * 8 7 5 11 11 N 1.31318 * 120.00685 * 204.53273 * 10 8 7 12 12 Si 1.86807 * 120.00062 * 24.53335 * 10 8 7 13 13 H 1.48498 * 109.47175 * 96.57123 * 12 10 8 14 14 H 1.48493 * 109.47560 * 216.57150 * 12 10 8 15 15 H 1.48505 * 109.46661 * 336.57487 * 12 10 8 16 16 C 1.34543 * 119.70099 * 180.02562 * 2 1 3 17 17 O 1.21582 * 119.53761 * 359.97135 * 16 2 1 18 18 H 1.09001 * 109.46630 * 359.97438 * 1 2 3 19 19 H 1.08997 * 109.47186 * 119.99876 * 1 2 3 20 20 H 1.08993 * 109.46781 * 239.99931 * 1 2 3 21 21 H 1.07999 * 120.17026 * 0.02562 * 3 2 1 22 22 H 1.08007 * 120.43349 * 180.02562 * 4 3 2 23 23 H 0.97003 * 120.00325 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1431 1.1887 0.0000 4 6 3.4943 1.1880 -0.0005 5 6 4.1819 -0.0479 -0.0070 6 8 5.3996 -0.0736 -0.0130 7 7 3.4773 -1.1975 -0.0016 8 6 4.1353 -2.4024 -0.0025 9 1 3.7683 -3.2175 -0.6087 10 6 5.2735 -2.5734 0.7766 11 7 6.1629 -3.4824 0.4494 12 14 5.5383 -1.5100 2.2895 13 1 5.0744 -2.2412 3.4959 14 1 6.9830 -1.1951 2.4267 15 1 4.7678 -0.2483 2.1486 16 6 2.1317 -1.1687 -0.0005 17 8 1.5098 -2.2134 -0.0005 18 1 -0.3632 1.0277 0.0005 19 1 -0.3633 -0.5138 -0.8900 20 1 -0.3632 -0.5138 0.8899 21 1 1.6009 2.1228 0.0004 22 1 4.0419 2.1189 -0.0001 23 1 6.9571 -3.6019 0.9934 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070163374.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:25 Heat of formation + Delta-G solvation = -13.195095 kcal Electronic energy + Delta-G solvation = -12661.479878 eV Core-core repulsion = 10283.777679 eV Total energy + Delta-G solvation = -2377.702199 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 196.063 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.31230 -37.96430 -36.32488 -34.14862 -32.41669 -30.92851 -26.97145 -25.69787 -22.94681 -22.21169 -18.59542 -18.10158 -16.54034 -16.14817 -15.80854 -14.98769 -14.15611 -13.87031 -13.44781 -12.97869 -12.92278 -12.59996 -12.38943 -12.03758 -11.14421 -10.97898 -10.46177 -10.01781 -9.66739 -9.05373 -8.90308 -8.25558 -7.85954 -6.46317 -4.23234 1.71212 2.88457 2.93296 3.35471 3.39240 3.42336 4.25756 4.31579 4.62578 4.86305 4.99924 5.17298 5.49656 5.62561 5.75477 5.95601 6.31442 6.77825 7.08589 7.41651 7.89918 8.33145 8.61918 8.81447 9.15814 9.46656 10.57690 Molecular weight = 196.06amu Principal moments of inertia in cm(-1) A = 0.046793 B = 0.017532 C = 0.014880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.242184 B = 1596.675556 C = 1881.300866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.540 5.540 3 C 0.133 3.867 4 C -0.289 4.289 5 C 0.504 3.496 6 O -0.533 6.533 7 N -0.391 5.391 8 C -0.356 4.356 9 H 0.114 0.886 10 C 0.104 3.896 11 N -0.831 5.831 12 Si 0.925 3.075 13 H -0.296 1.296 14 H -0.278 1.278 15 H -0.273 1.273 16 C 0.645 3.355 17 O -0.554 6.554 18 H 0.082 0.918 19 H 0.073 0.927 20 H 0.073 0.927 21 H 0.163 0.837 22 H 0.155 0.845 23 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.467 10.682 0.911 14.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.261 5.261 3 C 0.008 3.992 4 C -0.317 4.317 5 C 0.303 3.697 6 O -0.413 6.413 7 N -0.120 5.120 8 C -0.481 4.481 9 H 0.132 0.868 10 C -0.110 4.110 11 N -0.462 5.462 12 Si 0.754 3.246 13 H -0.225 1.225 14 H -0.203 1.203 15 H -0.198 1.198 16 C 0.351 3.649 17 O -0.430 6.430 18 H 0.101 0.899 19 H 0.092 0.908 20 H 0.092 0.908 21 H 0.180 0.820 22 H 0.173 0.827 23 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.036 9.820 0.908 13.375 hybrid contribution 0.178 0.613 0.688 0.939 sum -8.858 10.433 1.596 13.779 Atomic orbital electron populations 1.21829 0.76692 1.02860 1.03912 1.44926 1.08499 1.05135 1.67559 1.22027 0.93322 0.89256 0.94633 1.21930 0.93226 0.99403 1.17155 1.17228 0.88591 0.84163 0.79749 1.90568 1.13253 1.86748 1.50765 1.42379 1.03478 1.09284 1.56905 1.18933 1.08798 0.89766 1.30603 0.86803 1.25233 0.93412 0.94983 0.97366 1.69715 1.07604 1.32806 1.36097 0.86057 0.78612 0.80119 0.79831 1.22510 1.20331 1.19823 1.16638 0.83347 0.83101 0.81815 1.90854 1.66322 1.29928 1.55863 0.89884 0.90833 0.90827 0.82018 0.82739 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.06 10.05 59.85 0.60 1.66 14 2 N -0.54 -9.34 3.01 -128.95 -0.39 -9.72 14 3 C 0.13 1.93 10.39 -16.42 -0.17 1.76 14 4 C -0.29 -5.33 10.00 -39.48 -0.39 -5.72 14 5 C 0.50 12.73 4.96 -15.02 -0.07 12.65 14 6 O -0.53 -15.17 13.15 5.09 0.07 -15.10 14 7 N -0.39 -10.52 2.28 -68.67 -0.16 -10.67 14 8 C -0.36 -10.85 9.06 -14.83 -0.13 -10.98 14 9 H 0.11 3.69 7.95 -52.48 -0.42 3.27 14 10 C 0.10 3.13 4.69 -17.49 -0.08 3.05 14 11 N -0.83 -25.38 13.95 55.50 0.77 -24.61 14 12 Si 0.92 24.74 25.65 -169.99 -4.36 20.38 14 13 H -0.30 -7.62 7.11 56.52 0.40 -7.22 14 14 H -0.28 -7.35 7.11 56.52 0.40 -6.95 14 15 H -0.27 -7.20 5.39 56.52 0.30 -6.89 14 16 C 0.64 15.36 8.07 -87.29 -0.70 14.66 14 17 O -0.55 -14.54 16.13 5.29 0.09 -14.45 14 18 H 0.08 0.59 7.75 -51.93 -0.40 0.19 14 19 H 0.07 0.87 8.14 -51.93 -0.42 0.45 14 20 H 0.07 0.89 8.14 -51.93 -0.42 0.46 14 21 H 0.16 1.35 7.87 -52.49 -0.41 0.94 14 22 H 0.16 2.38 8.06 -52.48 -0.42 1.95 14 23 H 0.28 7.87 8.31 -40.82 -0.34 7.53 14 LS Contribution 207.21 15.07 3.12 3.12 Total: -1.00 -36.70 207.21 -3.55 -40.25 By element: Atomic # 1 Polarization: -4.53 SS G_CDS: -1.73 Total: -6.26 kcal Atomic # 6 Polarization: 18.03 SS G_CDS: -0.96 Total: 17.07 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 0.23 Total: -45.00 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: 0.15 Total: -29.56 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -4.36 Total: 20.38 kcal Total LS contribution 3.12 Total: 3.12 kcal Total: -36.70 -3.55 -40.25 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070163374.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.051 kcal (2) G-P(sol) polarization free energy of solvation -36.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds