Wall clock time and date at job start Sun Mar 29 2020 21:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50706 * 120.00172 * 2 1 4 4 N 1.46504 * 109.46875 * 124.99986 * 3 2 1 5 5 C 1.36931 * 120.00255 * 265.15306 * 4 3 2 6 6 H 1.07996 * 120.00285 * 145.92060 * 5 4 3 7 7 C 1.38819 * 120.00093 * 325.92581 * 5 4 3 8 8 N 1.31618 * 119.99486 * 337.97689 * 7 5 4 9 9 Si 1.86796 * 120.00332 * 157.97655 * 7 5 4 10 10 H 1.48504 * 109.46915 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47156 * 119.99775 * 9 7 5 12 12 H 1.48499 * 109.47046 * 240.00167 * 9 7 5 13 13 C 1.46499 * 119.99512 * 85.15455 * 4 3 2 14 14 C 1.54269 * 110.03061 * 122.09165 * 13 4 3 15 15 C 1.54966 * 104.15937 * 95.75085 * 14 13 4 16 16 C 1.54893 * 102.77818 * 37.88921 * 15 14 13 17 17 C 1.53880 * 110.03010 * 239.30557 * 13 4 3 18 18 H 1.08003 * 119.99836 * 359.97438 * 1 2 3 19 19 H 1.08001 * 120.00272 * 179.97438 * 1 2 3 20 20 H 1.08003 * 119.99836 * 180.02562 * 2 1 3 21 21 H 1.09001 * 109.46914 * 5.00286 * 3 2 1 22 22 H 1.08991 * 109.47571 * 245.00171 * 3 2 1 23 23 H 0.97000 * 119.99818 * 180.02562 * 8 7 5 24 24 H 1.08996 * 110.02336 * 0.70079 * 13 4 3 25 25 H 1.08994 * 110.48831 * 214.39665 * 14 13 4 26 26 H 1.09001 * 110.48533 * 337.04616 * 14 13 4 27 27 H 1.09001 * 110.72504 * 279.57635 * 15 14 13 28 28 H 1.09000 * 110.92274 * 156.29265 * 15 14 13 29 29 H 1.08999 * 110.48841 * 203.40295 * 16 15 14 30 30 H 1.09004 * 110.59981 * 80.81567 * 16 15 14 31 31 H 1.08994 * 110.03476 * 359.95661 * 17 13 4 32 32 H 1.09000 * 110.02817 * 121.38647 * 17 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.6210 1.9197 2.3107 6 1 2.9726 1.5177 3.2493 7 6 1.7910 3.0324 2.2996 8 7 1.7074 3.7802 1.2197 9 14 0.7929 3.4683 3.8172 10 1 1.0627 2.4762 4.8888 11 1 1.1755 4.8234 4.2888 12 1 -0.6532 3.4513 3.4802 13 6 4.3229 0.7296 1.0012 14 6 5.4115 1.7848 1.2869 15 6 5.7612 1.5735 2.7817 16 6 5.6943 0.0336 2.9349 17 6 4.5023 -0.3832 2.0488 18 1 -0.5400 0.9353 0.0004 19 1 -0.5401 -0.9353 -0.0004 20 1 1.8500 -0.9353 -0.0004 21 1 1.3586 2.1317 0.0896 22 1 2.6213 1.4027 -0.9313 23 1 1.1278 4.5579 1.2121 24 1 4.4516 0.3226 -0.0017 25 1 6.2869 1.6087 0.6619 26 1 5.0210 2.7894 1.1240 27 1 5.0243 2.0577 3.4225 28 1 6.7636 1.9404 3.0026 29 1 5.5107 -0.2388 3.9742 30 1 6.6150 -0.4277 2.5775 31 1 3.6008 -0.4747 2.6545 32 1 4.7179 -1.3303 1.5541 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070234726.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:16 Heat of formation + Delta-G solvation = 14.393015 kcal Electronic energy + Delta-G solvation = -12926.498716 eV Core-core repulsion = 10887.084927 eV Total energy + Delta-G solvation = -2039.413789 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.44805 -36.45318 -34.11323 -32.40394 -29.28975 -28.42933 -27.39795 -24.07151 -21.37647 -20.78104 -20.35275 -18.28002 -17.00718 -16.40858 -16.08806 -15.57859 -14.86164 -14.75849 -14.18491 -13.83929 -13.16193 -12.95911 -12.77564 -12.57018 -12.11743 -12.00048 -11.79431 -11.71494 -11.67058 -11.44876 -11.31922 -11.10667 -10.46830 -10.03345 -8.51079 -7.76970 -5.30952 1.42409 1.47429 1.55502 1.61770 2.54779 3.31140 3.74110 4.01335 4.06127 4.28905 4.42604 4.58305 4.74065 4.81233 4.89960 4.96807 5.00120 5.07645 5.14794 5.22989 5.29147 5.32731 5.57407 5.61742 5.71852 5.72744 5.86848 5.90833 6.20156 6.56016 7.23994 7.96816 8.46831 9.21460 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.026024 B = 0.017356 C = 0.012629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.685654 B = 1612.917793 C = 2216.668283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C 0.159 3.841 4 N -0.587 5.587 5 C -0.229 4.229 6 H 0.059 0.941 7 C -0.044 4.044 8 N -0.922 5.922 9 Si 0.943 3.057 10 H -0.270 1.270 11 H -0.294 1.294 12 H -0.293 1.293 13 C 0.158 3.842 14 C -0.125 4.125 15 C -0.115 4.115 16 C -0.110 4.110 17 C -0.128 4.128 18 H 0.075 0.925 19 H 0.110 0.890 20 H 0.103 0.897 21 H 0.075 0.925 22 H 0.027 0.973 23 H 0.247 0.753 24 H 0.056 0.944 25 H 0.068 0.932 26 H 0.032 0.968 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.046 0.954 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.572 -7.331 0.214 8.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.173 4.173 3 C 0.033 3.967 4 N -0.307 5.307 5 C -0.360 4.360 6 H 0.076 0.924 7 C -0.239 4.239 8 N -0.568 5.568 9 Si 0.772 3.228 10 H -0.195 1.195 11 H -0.222 1.222 12 H -0.220 1.220 13 C 0.051 3.949 14 C -0.164 4.164 15 C -0.153 4.153 16 C -0.148 4.148 17 C -0.167 4.167 18 H 0.094 0.906 19 H 0.128 0.872 20 H 0.121 0.879 21 H 0.093 0.907 22 H 0.045 0.955 23 H 0.056 0.944 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.506 -7.187 0.188 8.485 hybrid contribution -0.851 0.696 0.629 1.267 sum 3.654 -6.491 0.818 7.494 Atomic orbital electron populations 1.23708 0.95910 1.01040 1.03854 1.23845 0.96573 0.99757 0.97084 1.20130 0.93522 0.94578 0.88450 1.44111 1.10116 1.65053 1.11398 1.19097 1.25745 1.05115 0.86007 0.92387 1.25621 1.03796 0.95688 0.98843 1.70109 1.40544 1.15955 1.30185 0.85576 0.78872 0.77362 0.80962 1.19471 1.22159 1.21979 1.21308 0.84837 0.92226 0.96519 1.22651 0.97932 0.99019 0.96798 1.22390 0.99987 0.96601 0.96307 1.22248 0.98181 0.95189 0.99180 1.22549 0.98079 0.98213 0.97886 0.90623 0.87194 0.87933 0.90688 0.95496 0.94355 0.92532 0.91308 0.94870 0.93715 0.91290 0.92211 0.90187 0.93533 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -7.80 14.32 67.78 0.97 -6.82 16 2 C -0.15 -6.19 9.84 25.65 0.25 -5.94 16 3 C 0.16 7.61 5.64 85.63 0.48 8.10 16 4 N -0.59 -28.63 2.32 -678.30 -1.57 -30.20 16 5 C -0.23 -12.24 7.39 84.04 0.62 -11.62 16 6 H 0.06 3.13 6.47 -2.91 -0.02 3.11 16 7 C -0.04 -2.43 4.93 84.86 0.42 -2.01 16 8 N -0.92 -54.00 11.33 21.65 0.25 -53.75 16 9 Si 0.94 45.24 29.61 68.60 2.03 47.28 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 12 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 13 C 0.16 6.41 3.48 45.72 0.16 6.57 16 14 C -0.12 -4.90 6.10 31.70 0.19 -4.71 16 15 C -0.12 -4.09 6.53 31.91 0.21 -3.88 16 16 C -0.11 -3.38 6.83 31.67 0.22 -3.17 16 17 C -0.13 -4.51 6.15 31.32 0.19 -4.31 16 18 H 0.08 3.07 7.84 -2.91 -0.02 3.05 16 19 H 0.11 3.40 8.06 -2.91 -0.02 3.38 16 20 H 0.10 3.78 8.06 -2.91 -0.02 3.76 16 21 H 0.08 4.13 4.99 -2.39 -0.01 4.12 16 22 H 0.03 1.25 8.03 -2.39 -0.02 1.24 16 23 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 24 H 0.06 2.16 7.89 -2.39 -0.02 2.15 16 25 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.03 1.57 7.97 -2.39 -0.02 1.55 16 27 H 0.04 1.86 6.79 -2.39 -0.02 1.84 16 28 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.06 1.74 8.14 -2.39 -0.02 1.73 16 30 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.05 1.88 7.04 -2.39 -0.02 1.86 16 32 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -59.10 257.93 5.48 -53.62 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 1.06 Total: 10.85 kcal Atomic # 6 Polarization: -31.51 SS G_CDS: 3.71 Total: -27.80 kcal Atomic # 7 Polarization: -82.63 SS G_CDS: -1.33 Total: -83.95 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.28 kcal Total: -59.10 5.48 -53.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070234726.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.014 kcal (2) G-P(sol) polarization free energy of solvation -59.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds