Wall clock time and date at job start Sun Mar 29 2020 21:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28344 * 124.31073 * 2 1 4 4 C 1.33617 * 109.98822 * 179.72959 * 3 2 1 5 5 C 1.40020 * 127.01525 * 180.02562 * 4 3 2 6 6 H 1.08003 * 119.99972 * 179.97438 * 5 4 3 7 7 C 1.46590 * 120.00314 * 359.97438 * 5 4 3 8 8 N 1.29487 * 120.00053 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00310 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47011 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.47177 * 120.00150 * 9 7 5 12 12 H 1.48504 * 109.47764 * 240.00311 * 9 7 5 13 13 C 1.47073 * 105.96310 * 359.97438 * 4 3 2 14 14 C 1.34849 * 104.89517 * 359.97438 * 13 4 3 15 15 N 1.48023 * 126.10884 * 180.02562 * 14 13 4 16 16 O 1.31700 * 119.99686 * 180.02562 * 15 14 13 17 17 O 1.31701 * 119.99803 * 359.97438 * 15 14 13 18 18 H 1.09000 * 109.46945 * 90.02881 * 1 2 3 19 19 H 1.08995 * 109.46930 * 210.02870 * 1 2 3 20 20 H 1.09001 * 109.46902 * 330.02990 * 1 2 3 21 21 H 0.96990 * 120.00150 * 180.02562 * 8 7 5 22 22 H 1.07998 * 127.54899 * 180.02562 * 13 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.1885 1.0601 0.0000 4 6 3.4831 0.7296 0.0059 5 6 4.5765 1.6043 0.0084 6 1 5.5824 1.2113 0.0137 7 6 4.3558 3.0535 0.0037 8 7 3.1497 3.5247 -0.0022 9 14 5.8143 4.2205 0.0077 10 1 7.0755 3.4365 0.0150 11 1 5.7692 5.0733 -1.2073 12 1 5.7579 5.0794 1.2178 13 6 3.5252 -0.7405 0.0106 14 6 2.2325 -1.1243 0.0075 15 7 1.7366 -2.5190 0.0107 16 8 0.4414 -2.7573 0.0066 17 8 2.5907 -3.5215 0.0167 18 1 -0.3633 -0.0005 -1.0277 19 1 -0.3633 -0.8897 0.5143 20 1 -0.3633 0.8903 0.5134 21 1 3.0037 4.4836 -0.0057 22 1 4.4000 -1.3739 0.0163 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072209576.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:02 Heat of formation + Delta-G solvation = 95.229190 kcal Electronic energy + Delta-G solvation = -12053.905073 eV Core-core repulsion = 9615.478592 eV Total energy + Delta-G solvation = -2438.426481 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.05563 -37.93341 -34.09089 -33.70372 -32.00101 -30.31927 -27.75429 -25.73520 -24.19444 -20.64866 -20.18534 -18.32481 -17.30544 -16.22597 -15.84474 -15.16792 -14.47721 -14.43656 -13.35352 -12.93371 -12.17513 -12.06980 -11.53746 -11.40292 -11.05680 -10.73068 -10.47426 -10.29294 -10.18598 -9.66304 -9.26598 -8.49691 -8.11924 -6.93072 -4.60627 0.12428 1.63656 2.83571 2.84101 2.98697 3.03201 3.47115 3.76439 3.79786 5.01868 5.25523 5.65269 5.85169 5.95414 6.05537 6.15270 6.37306 6.78637 7.05136 7.40142 7.59481 8.12397 8.24211 8.60527 9.42030 10.00923 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.067966 B = 0.009908 C = 0.008688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.874763 B = 2825.188378 C = 3221.917745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.291 5.291 3 N -0.263 5.263 4 C 0.191 3.809 5 C -0.445 4.445 6 H 0.098 0.902 7 C 0.073 3.927 8 N -0.740 5.740 9 Si 0.923 3.077 10 H -0.255 1.255 11 H -0.272 1.272 12 H -0.272 1.272 13 C -0.214 4.214 14 C 0.083 3.917 15 N 0.036 4.964 16 O -0.236 6.236 17 O -0.201 6.201 18 H 0.072 0.928 19 H 0.097 0.903 20 H 0.090 0.910 21 H 0.285 0.715 22 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.776 0.320 0.116 0.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.083 5.083 3 N -0.108 5.108 4 C 0.053 3.947 5 C -0.482 4.482 6 H 0.116 0.884 7 C -0.155 4.155 8 N -0.363 5.363 9 Si 0.746 3.254 10 H -0.179 1.179 11 H -0.197 1.197 12 H -0.197 1.197 13 C -0.254 4.254 14 C -0.128 4.128 15 N 0.495 4.505 16 O -0.412 6.412 17 O -0.382 6.382 18 H 0.090 0.910 19 H 0.115 0.885 20 H 0.109 0.891 21 H 0.097 0.903 22 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.742 1.780 0.107 2.493 hybrid contribution 0.757 -0.557 -0.030 0.940 sum -0.985 1.223 0.076 1.572 Atomic orbital electron populations 1.22148 0.74628 1.05019 1.03632 1.45797 1.07467 1.00346 1.54643 1.75242 1.03822 1.03953 1.27819 1.20212 0.90390 0.87811 0.96326 1.19702 0.91994 0.88016 1.48490 0.88410 1.27366 0.96826 0.99204 0.92095 1.69182 1.22832 1.15419 1.28859 0.86018 0.81390 0.79353 0.78627 1.17869 1.19713 1.19707 1.22459 0.92445 0.96595 1.13930 1.21022 0.92131 0.75851 1.23786 1.49533 1.02176 1.03264 0.95575 1.96145 0.92794 1.93042 1.59171 1.96228 1.50724 1.33556 1.57693 0.90970 0.88505 0.89112 0.90328 0.82636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.55 10.70 59.85 0.64 2.19 14 2 N -0.29 -6.70 3.71 -64.63 -0.24 -6.94 14 3 N -0.26 -6.77 10.41 33.26 0.35 -6.42 14 4 C 0.19 4.94 6.96 -82.84 -0.58 4.37 14 5 C -0.45 -11.13 9.69 -35.55 -0.34 -11.47 14 6 H 0.10 2.26 7.94 -52.48 -0.42 1.85 14 7 C 0.07 1.72 5.67 -15.17 -0.09 1.63 14 8 N -0.74 -18.27 12.12 55.99 0.68 -17.60 14 9 Si 0.92 17.28 29.64 -169.99 -5.04 12.24 14 10 H -0.26 -4.68 7.11 56.52 0.40 -4.28 14 11 H -0.27 -5.03 7.11 56.52 0.40 -4.62 14 12 H -0.27 -5.02 7.11 56.52 0.40 -4.62 14 13 C -0.21 -5.06 10.93 -37.20 -0.41 -5.47 14 14 C 0.08 1.94 7.97 -143.74 -1.15 0.79 14 15 N 0.04 0.82 4.98 33.00 0.16 0.98 14 16 O -0.24 -5.12 17.22 -31.57 -0.54 -5.67 14 17 O -0.20 -4.57 19.76 -31.57 -0.62 -5.19 14 18 H 0.07 1.17 8.14 -51.93 -0.42 0.74 14 19 H 0.10 1.63 5.99 -51.93 -0.31 1.32 14 20 H 0.09 1.47 8.14 -51.93 -0.42 1.05 14 21 H 0.28 6.27 8.27 -40.82 -0.34 5.94 14 22 H 0.16 3.30 8.06 -52.49 -0.42 2.88 14 LS Contribution 217.62 15.07 3.28 3.28 Total: -1.00 -28.01 217.62 -5.02 -33.03 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: -1.13 Total: 0.25 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -1.92 Total: -7.96 kcal Atomic # 7 Polarization: -30.93 SS G_CDS: 0.95 Total: -29.98 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -1.17 Total: -10.86 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.04 Total: 12.24 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -28.01 -5.02 -33.03 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072209576.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.260 kcal (2) G-P(sol) polarization free energy of solvation -28.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds