Wall clock time and date at job start Sun Mar 29 2020 21:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.29822 * 118.55834 * 2 1 4 4 C 1.50141 * 123.28945 * 180.37452 * 3 2 1 5 5 N 1.46848 * 110.26950 * 342.95231 * 4 3 2 6 6 C 1.46906 * 110.99897 * 287.53448 * 5 4 3 7 7 C 1.53001 * 109.47194 * 293.95426 * 6 5 4 8 8 C 1.50692 * 109.46919 * 180.02562 * 7 6 5 9 9 H 1.08003 * 120.00190 * 0.02562 * 8 7 6 10 10 C 1.37882 * 120.00109 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99504 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00345 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46763 * 60.00047 * 12 10 8 14 14 H 1.48504 * 109.47257 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47067 * 300.00030 * 12 10 8 16 16 C 1.47229 * 110.21944 * 50.91442 * 5 4 3 17 17 C 1.50306 * 118.55068 * 179.97438 * 2 1 3 18 18 H 1.09001 * 109.46729 * 270.02122 * 1 2 3 19 19 H 1.08995 * 109.47157 * 30.01379 * 1 2 3 20 20 H 1.08994 * 109.47275 * 150.02224 * 1 2 3 21 21 H 1.07998 * 118.35227 * 0.40083 * 3 2 1 22 22 H 1.08997 * 109.33411 * 103.19329 * 4 3 2 23 23 H 1.08992 * 109.33906 * 222.70706 * 4 3 2 24 24 H 1.08996 * 109.47109 * 53.95646 * 6 5 4 25 25 H 1.09007 * 109.46805 * 173.96012 * 6 5 4 26 26 H 1.09004 * 109.47446 * 300.00351 * 7 6 5 27 27 H 1.08997 * 109.46752 * 60.00413 * 7 6 5 28 28 H 0.97003 * 119.99745 * 179.97438 * 11 10 8 29 29 H 1.09004 * 109.63075 * 171.51137 * 16 5 4 30 30 H 1.09001 * 109.63801 * 50.89967 * 16 5 4 31 31 H 1.09004 * 109.43300 * 283.57594 * 17 2 1 32 32 H 1.08997 * 109.43380 * 43.42211 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1276 1.1403 0.0000 4 6 3.6239 1.2641 -0.0082 5 7 4.2418 -0.0077 0.3881 6 6 4.0641 -0.2540 1.8255 7 6 4.8439 0.7936 2.6226 8 6 4.6621 0.5406 4.0970 9 1 4.0518 -0.2851 4.4320 10 6 5.2750 1.3632 5.0184 11 7 6.0185 2.3683 4.6104 12 14 5.0491 1.0500 6.8460 13 1 5.5552 -0.3050 7.1822 14 1 5.8060 2.0667 7.6197 15 1 3.6069 1.1390 7.1889 16 6 3.6860 -1.1137 -0.4090 17 6 2.2254 -1.3203 0.0006 18 1 -0.3633 0.0004 1.0277 19 1 -0.3633 0.8898 -0.5140 20 1 -0.3633 -0.8901 -0.5135 21 1 1.5380 2.0451 0.0066 22 1 3.9584 1.5309 -1.0107 23 1 3.9253 2.0448 0.6900 24 1 3.0057 -0.1883 2.0772 25 1 4.4354 -1.2487 2.0722 26 1 5.9025 0.7280 2.3708 27 1 4.4727 1.7883 2.3758 28 1 6.4494 2.9472 5.2586 29 1 4.2527 -2.0247 -0.2166 30 1 3.7376 -0.8636 -1.4687 31 1 2.1868 -1.7537 1.0000 32 1 1.7429 -1.9960 -0.7056 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075423289.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:29 Heat of formation + Delta-G solvation = 4.993099 kcal Electronic energy + Delta-G solvation = -12452.888085 eV Core-core repulsion = 10413.066684 eV Total energy + Delta-G solvation = -2039.821400 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.23879 -34.27093 -32.79153 -30.65572 -29.79211 -27.06166 -24.73010 -23.32877 -22.02917 -20.12090 -16.90296 -16.32327 -15.28068 -14.83299 -14.47903 -14.28717 -13.83123 -13.32869 -12.95529 -12.35665 -12.13212 -11.68380 -11.63620 -11.45495 -11.22508 -10.98813 -10.85536 -10.53350 -10.28198 -9.76434 -9.30719 -9.08655 -8.45850 -8.26012 -7.62835 -5.95926 -3.97844 2.48139 3.35398 3.39556 3.42048 4.44442 4.63859 4.98813 5.20327 5.39149 5.40353 5.44355 5.70184 5.72301 5.77850 5.90032 6.01771 6.04097 6.10848 6.21629 6.32622 6.49746 6.58858 6.86455 7.04721 7.22733 7.57081 7.64525 7.84595 7.95878 8.13600 8.48620 9.09136 9.65213 11.15516 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.047385 B = 0.008703 C = 0.008330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.765847 B = 3216.670846 C = 3360.351991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.136 4.136 3 C -0.178 4.178 4 C 0.076 3.924 5 N -0.530 5.530 6 C 0.059 3.941 7 C 0.028 3.972 8 C -0.520 4.520 9 H 0.052 0.948 10 C 0.058 3.942 11 N -0.894 5.894 12 Si 0.891 3.109 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.278 1.278 16 C 0.052 3.948 17 C -0.118 4.118 18 H 0.062 0.938 19 H 0.058 0.942 20 H 0.057 0.943 21 H 0.102 0.898 22 H 0.076 0.924 23 H 0.096 0.904 24 H 0.027 0.973 25 H 0.057 0.943 26 H 0.023 0.977 27 H 0.017 0.983 28 H 0.260 0.740 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.941 -4.499 -9.366 13.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.137 4.137 3 C -0.198 4.198 4 C -0.052 4.052 5 N -0.252 5.252 6 C -0.068 4.068 7 C -0.009 4.009 8 C -0.559 4.559 9 H 0.070 0.930 10 C -0.143 4.143 11 N -0.533 5.533 12 Si 0.719 3.281 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.203 1.203 16 C -0.077 4.077 17 C -0.156 4.156 18 H 0.081 0.919 19 H 0.077 0.923 20 H 0.076 0.924 21 H 0.120 0.880 22 H 0.094 0.906 23 H 0.114 0.886 24 H 0.045 0.955 25 H 0.076 0.924 26 H 0.041 0.959 27 H 0.035 0.965 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.296 -4.322 -9.389 12.652 hybrid contribution -1.116 -0.118 1.281 1.703 sum -8.412 -4.440 -8.108 12.498 Atomic orbital electron populations 1.20859 0.92882 1.01632 1.01755 1.20865 0.95390 0.95018 1.02410 1.22803 0.98457 0.97309 1.01211 1.21152 0.88559 0.94107 1.01405 1.62809 1.54769 1.01311 1.06286 1.22358 0.98810 1.00964 0.84685 1.19095 0.95719 0.93023 0.93065 1.21159 1.30088 1.13208 0.91470 0.92952 1.24989 0.95259 0.95203 0.98871 1.69964 1.32185 1.17034 1.34117 0.86672 0.78139 0.77921 0.85335 1.20253 1.21266 1.20340 1.22235 0.91982 0.95585 0.97884 1.21029 0.97369 0.95020 1.02201 0.91886 0.92326 0.92446 0.88023 0.90625 0.88633 0.95462 0.92436 0.95865 0.96504 0.92985 0.90792 0.91408 0.90702 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 9.91 36.01 0.36 -1.06 16 2 C -0.14 -2.06 5.25 -100.93 -0.53 -2.59 16 3 C -0.18 -2.88 8.95 -35.97 -0.32 -3.20 16 4 C 0.08 1.34 5.83 -5.27 -0.03 1.31 16 5 N -0.53 -10.08 5.03 -236.11 -1.19 -11.27 16 6 C 0.06 1.29 4.00 -3.82 -0.02 1.27 16 7 C 0.03 0.76 4.92 -27.89 -0.14 0.62 16 8 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 9 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 10 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -27.27 13.29 55.43 0.74 -26.53 16 12 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 C 0.05 0.80 6.03 -3.60 -0.02 0.78 16 17 C -0.12 -1.70 5.23 -28.03 -0.15 -1.85 16 18 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 19 H 0.06 0.66 7.94 -51.93 -0.41 0.25 16 20 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 21 H 0.10 1.51 7.87 -52.49 -0.41 1.10 16 22 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 23 H 0.10 1.89 6.01 -51.93 -0.31 1.58 16 24 H 0.03 0.61 6.00 -51.93 -0.31 0.29 16 25 H 0.06 1.25 8.09 -51.93 -0.42 0.83 16 26 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.02 0.47 6.33 -51.93 -0.33 0.14 16 28 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 31 H 0.07 1.16 7.13 -51.93 -0.37 0.79 16 32 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 LS Contribution 256.16 15.07 3.86 3.86 Total: -1.00 -30.37 256.16 -7.93 -38.30 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -5.06 Total: -2.83 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -1.26 Total: -18.51 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: -0.45 Total: -37.80 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.37 -7.93 -38.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075423289.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.297 kcal (2) G-P(sol) polarization free energy of solvation -30.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds