Wall clock time and date at job start Sun Mar 29 2020 21:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.29822 * 118.55834 * 2 1 4 4 C 1.50141 * 123.28945 * 180.37452 * 3 2 1 5 5 N 1.46848 * 110.26950 * 342.95231 * 4 3 2 6 6 C 1.46906 * 110.99897 * 287.53448 * 5 4 3 7 7 C 1.53001 * 109.47194 * 293.95426 * 6 5 4 8 8 C 1.50692 * 109.46919 * 180.02562 * 7 6 5 9 9 H 1.08003 * 120.00190 * 0.02562 * 8 7 6 10 10 C 1.37882 * 120.00109 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99504 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00345 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46763 * 60.00047 * 12 10 8 14 14 H 1.48504 * 109.47257 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47067 * 300.00030 * 12 10 8 16 16 C 1.47229 * 110.21944 * 50.91442 * 5 4 3 17 17 C 1.50306 * 118.55068 * 179.97438 * 2 1 3 18 18 H 1.09001 * 109.46729 * 270.02122 * 1 2 3 19 19 H 1.08995 * 109.47157 * 30.01379 * 1 2 3 20 20 H 1.08994 * 109.47275 * 150.02224 * 1 2 3 21 21 H 1.07998 * 118.35227 * 0.40083 * 3 2 1 22 22 H 1.08997 * 109.33411 * 103.19329 * 4 3 2 23 23 H 1.08992 * 109.33906 * 222.70706 * 4 3 2 24 24 H 1.08996 * 109.47109 * 53.95646 * 6 5 4 25 25 H 1.09007 * 109.46805 * 173.96012 * 6 5 4 26 26 H 1.09004 * 109.47446 * 300.00351 * 7 6 5 27 27 H 1.08997 * 109.46752 * 60.00413 * 7 6 5 28 28 H 0.97003 * 119.99745 * 179.97438 * 11 10 8 29 29 H 1.09004 * 109.63075 * 171.51137 * 16 5 4 30 30 H 1.09001 * 109.63801 * 50.89967 * 16 5 4 31 31 H 1.09004 * 109.43300 * 283.57594 * 17 2 1 32 32 H 1.08997 * 109.43380 * 43.42211 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1276 1.1403 0.0000 4 6 3.6239 1.2641 -0.0082 5 7 4.2418 -0.0077 0.3881 6 6 4.0641 -0.2540 1.8255 7 6 4.8439 0.7936 2.6226 8 6 4.6621 0.5406 4.0970 9 1 4.0518 -0.2851 4.4320 10 6 5.2750 1.3632 5.0184 11 7 6.0185 2.3683 4.6104 12 14 5.0491 1.0500 6.8460 13 1 5.5552 -0.3050 7.1822 14 1 5.8060 2.0667 7.6197 15 1 3.6069 1.1390 7.1889 16 6 3.6860 -1.1137 -0.4090 17 6 2.2254 -1.3203 0.0006 18 1 -0.3633 0.0004 1.0277 19 1 -0.3633 0.8898 -0.5140 20 1 -0.3633 -0.8901 -0.5135 21 1 1.5380 2.0451 0.0066 22 1 3.9584 1.5309 -1.0107 23 1 3.9253 2.0448 0.6900 24 1 3.0057 -0.1883 2.0772 25 1 4.4354 -1.2487 2.0722 26 1 5.9025 0.7280 2.3708 27 1 4.4727 1.7883 2.3758 28 1 6.4494 2.9472 5.2586 29 1 4.2527 -2.0247 -0.2166 30 1 3.7376 -0.8636 -1.4687 31 1 2.1868 -1.7537 1.0000 32 1 1.7429 -1.9960 -0.7056 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075423289.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:29 Heat of formation + Delta-G solvation = -14.428170 kcal Electronic energy + Delta-G solvation = -12453.730254 eV Core-core repulsion = 10413.066684 eV Total energy + Delta-G solvation = -2040.663570 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.60352 -35.91823 -34.67022 -32.07707 -31.52438 -28.45547 -26.54310 -24.69887 -23.64607 -21.78190 -18.68425 -18.05877 -16.73864 -16.51162 -16.15661 -15.71304 -15.24658 -14.72904 -14.27435 -14.11650 -13.52105 -13.24729 -13.21500 -12.79959 -12.71214 -12.68725 -12.50410 -12.29408 -11.70329 -11.60453 -11.25667 -11.22430 -10.53828 -9.64293 -9.10786 -8.19868 -6.31220 1.27339 1.38995 1.42598 1.50521 2.40125 3.13028 3.17968 3.84517 4.00997 4.16142 4.28790 4.39911 4.56606 4.62394 4.70872 4.75259 4.81999 4.87236 4.95254 4.97727 5.02634 5.13429 5.15195 5.45219 5.67572 5.68437 5.79820 5.99971 6.16412 6.31662 6.36597 6.85531 7.37443 8.92199 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.047385 B = 0.008703 C = 0.008330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.765847 B = 3216.670846 C = 3360.351991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.132 4.132 3 C -0.202 4.202 4 C 0.077 3.923 5 N -0.546 5.546 6 C 0.081 3.919 7 C 0.036 3.964 8 C -0.545 4.545 9 H 0.058 0.942 10 C 0.001 3.999 11 N -0.931 5.931 12 Si 0.966 3.034 13 H -0.266 1.266 14 H -0.281 1.281 15 H -0.267 1.267 16 C 0.050 3.950 17 C -0.117 4.117 18 H 0.060 0.940 19 H 0.068 0.932 20 H 0.078 0.922 21 H 0.110 0.890 22 H 0.094 0.906 23 H 0.062 0.938 24 H 0.024 0.976 25 H 0.058 0.942 26 H -0.010 1.010 27 H -0.006 1.006 28 H 0.264 0.736 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.372 -5.831 -9.431 14.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.132 4.132 3 C -0.222 4.222 4 C -0.050 4.050 5 N -0.268 5.268 6 C -0.047 4.047 7 C -0.001 4.001 8 C -0.583 4.583 9 H 0.076 0.924 10 C -0.197 4.197 11 N -0.571 5.571 12 Si 0.790 3.210 13 H -0.191 1.191 14 H -0.207 1.207 15 H -0.192 1.192 16 C -0.078 4.078 17 C -0.156 4.156 18 H 0.079 0.921 19 H 0.087 0.913 20 H 0.097 0.903 21 H 0.128 0.872 22 H 0.112 0.888 23 H 0.080 0.920 24 H 0.042 0.958 25 H 0.076 0.924 26 H 0.008 0.992 27 H 0.012 0.988 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.738 -5.666 -9.474 14.079 hybrid contribution -0.652 0.299 1.227 1.421 sum -9.390 -5.367 -8.247 13.601 Atomic orbital electron populations 1.20890 0.90734 1.03272 1.02075 1.21244 0.97081 0.94765 1.00134 1.22764 0.97369 0.98429 1.03621 1.21059 0.90084 0.92597 1.01299 1.62710 1.56211 1.03122 1.04786 1.21922 0.97441 0.98968 0.86346 1.18928 0.94215 0.93530 0.93429 1.21585 1.30416 1.13587 0.92755 0.92379 1.25974 0.94652 0.94730 1.04339 1.70108 1.33002 1.17996 1.36026 0.85493 0.78588 0.78242 0.78675 1.19078 1.20656 1.19206 1.22363 0.92756 0.94469 0.98175 1.21059 0.96761 0.95298 1.02451 0.92084 0.91270 0.90336 0.87242 0.88844 0.92018 0.95793 0.92353 0.99187 0.98814 0.92739 0.89934 0.89538 0.91742 0.88260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.47 9.91 71.24 0.71 -1.76 16 2 C -0.13 -3.69 5.25 -15.40 -0.08 -3.77 16 3 C -0.20 -6.36 8.95 26.69 0.24 -6.13 16 4 C 0.08 2.76 5.83 85.39 0.50 3.26 16 5 N -0.55 -20.70 5.03 -900.92 -4.53 -25.23 16 6 C 0.08 3.59 4.00 86.30 0.35 3.93 16 7 C 0.04 2.02 4.92 29.85 0.15 2.17 16 8 C -0.54 -32.08 9.11 25.60 0.23 -31.84 16 9 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 10 C 0.00 0.06 5.46 84.66 0.46 0.52 16 11 N -0.93 -58.06 13.29 21.45 0.28 -57.78 16 12 Si 0.97 45.07 29.54 68.60 2.03 47.09 16 13 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 14 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 15 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 16 C 0.05 1.44 6.03 86.27 0.52 1.96 16 17 C -0.12 -3.08 5.23 29.76 0.16 -2.93 16 18 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 19 H 0.07 1.37 7.94 -2.39 -0.02 1.35 16 20 H 0.08 1.39 8.08 -2.39 -0.02 1.37 16 21 H 0.11 3.20 7.87 -2.91 -0.02 3.17 16 22 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 23 H 0.06 2.59 6.01 -2.39 -0.01 2.58 16 24 H 0.02 1.07 6.00 -2.39 -0.01 1.05 16 25 H 0.06 2.54 8.09 -2.38 -0.02 2.52 16 26 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 27 H -0.01 -0.38 6.33 -2.39 -0.02 -0.40 16 28 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 29 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 30 H 0.09 2.19 8.08 -2.39 -0.02 2.17 16 31 H 0.06 1.86 7.13 -2.39 -0.02 1.85 16 32 H 0.10 2.00 8.13 -2.39 -0.02 1.98 16 Total: -1.00 -65.70 256.16 2.07 -63.63 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: 1.07 Total: 6.88 kcal Atomic # 6 Polarization: -37.81 SS G_CDS: 3.23 Total: -34.59 kcal Atomic # 7 Polarization: -78.76 SS G_CDS: -4.25 Total: -83.01 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -65.70 2.07 -63.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075423289.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.202 kcal (2) G-P(sol) polarization free energy of solvation -65.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds