Wall clock time and date at job start Sun Mar 29 2020 21:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99963 * 2 1 4 4 H 1.48496 * 109.47176 * 270.00614 * 3 2 1 5 5 H 1.48497 * 109.46634 * 30.00568 * 3 2 1 6 6 H 1.48495 * 109.46772 * 150.00471 * 3 2 1 7 7 C 1.38812 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00239 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00053 * 359.97438 * 7 2 1 10 10 C 1.47800 * 125.92694 * 359.85516 * 9 7 2 11 11 C 1.53582 * 106.38165 * 180.49431 * 10 9 7 12 12 H 1.08996 * 108.82379 * 269.28643 * 11 10 9 13 13 C 1.51038 * 112.71544 * 147.82570 * 11 10 9 14 14 C 1.52840 * 111.45701 * 296.17865 * 13 11 10 15 15 C 1.53277 * 108.30023 * 300.72890 * 14 13 11 16 16 C 1.52634 * 108.56684 * 63.46565 * 15 14 13 17 17 C 1.52974 * 110.87092 * 297.87653 * 16 15 14 18 18 H 1.09001 * 113.18665 * 286.59158 * 17 16 15 19 19 C 1.47752 * 125.82374 * 180.02562 * 9 7 2 20 20 H 0.96998 * 120.00251 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.97000 * 61.30885 * 10 9 7 22 22 H 1.09009 * 110.21020 * 299.80789 * 10 9 7 23 23 H 1.08993 * 109.08428 * 56.69225 * 13 11 10 24 24 H 1.08999 * 109.08030 * 175.74027 * 13 11 10 25 25 H 1.08994 * 109.70015 * 60.43677 * 14 13 11 26 26 H 1.09001 * 109.69228 * 181.02927 * 14 13 11 27 27 H 1.08998 * 109.61622 * 183.19114 * 15 14 13 28 28 H 1.08999 * 109.61951 * 303.74454 * 15 14 13 29 29 H 1.09001 * 109.19786 * 177.51459 * 16 15 14 30 30 H 1.08999 * 109.19416 * 58.23283 * 16 15 14 31 31 H 1.09002 * 110.50178 * 35.36433 * 19 9 7 32 32 H 1.09000 * 110.50158 * 272.81406 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4401 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1445 -2.5408 0.0030 11 6 -0.4231 -4.0511 0.0142 12 1 -0.5013 -4.4019 -1.0148 13 6 -1.6874 -4.4054 0.7608 14 6 -1.5815 -4.0448 2.2422 15 6 -0.3968 -4.8114 2.8407 16 6 0.8835 -4.3374 2.1582 17 6 0.8475 -4.6430 0.6597 18 1 0.9825 -5.7008 0.4341 19 6 1.9307 -3.7360 -0.0005 20 1 -0.4850 0.8400 0.0004 21 1 -0.5679 -2.0887 -0.8939 22 1 -0.5693 -2.0752 0.8924 23 1 -2.5246 -3.8636 0.3210 24 1 -1.8679 -5.4763 0.6677 25 1 -1.4169 -2.9727 2.3486 26 1 -2.5001 -4.3287 2.7559 27 1 -0.3360 -4.6136 3.9109 28 1 -0.5285 -5.8799 2.6701 29 1 1.7377 -4.8443 2.6070 30 1 0.9894 -3.2622 2.3023 31 1 2.8467 -3.7433 0.5904 32 1 2.1328 -4.0637 -1.0203 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075546407.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:25:25 Heat of formation + Delta-G solvation = 5.897059 kcal Electronic energy + Delta-G solvation = -13125.487549 eV Core-core repulsion = 11085.705348 eV Total energy + Delta-G solvation = -2039.782201 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.10562 -34.55325 -31.93863 -30.85017 -28.92342 -25.98596 -24.84195 -22.00846 -21.20327 -19.81318 -17.83785 -16.74304 -15.20898 -14.53907 -13.90681 -13.79267 -13.46889 -13.25684 -12.16399 -11.99101 -11.65576 -11.28030 -11.14719 -10.96158 -10.81149 -10.62717 -10.47577 -10.25379 -9.92696 -9.65266 -9.39092 -9.25497 -9.21916 -8.51327 -6.72221 -5.63736 -2.95714 3.43797 3.48683 3.50551 4.56306 5.20034 5.29954 5.33852 5.57483 5.68199 5.78501 5.88148 5.94127 6.01084 6.09605 6.15990 6.25730 6.39467 6.50949 6.60738 6.66037 6.69603 6.81551 6.85618 6.94427 7.00309 7.25376 7.65388 7.75590 7.93621 8.33009 9.29297 9.90263 10.59585 11.48405 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.050427 B = 0.011919 C = 0.011268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.129431 B = 2348.554942 C = 2484.418937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.224 4.224 8 H 0.076 0.924 9 N -0.606 5.606 10 C 0.186 3.814 11 C -0.112 4.112 12 H 0.055 0.945 13 C -0.097 4.097 14 C -0.120 4.120 15 C -0.114 4.114 16 C -0.108 4.108 17 C -0.099 4.099 18 H 0.070 0.930 19 C 0.134 3.866 20 H 0.251 0.749 21 H 0.037 0.963 22 H 0.050 0.950 23 H 0.056 0.944 24 H 0.048 0.952 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.038 0.962 32 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.657 -8.829 3.157 9.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.352 4.352 8 H 0.094 0.906 9 N -0.332 5.332 10 C 0.061 3.939 11 C -0.132 4.132 12 H 0.073 0.927 13 C -0.135 4.135 14 C -0.157 4.157 15 C -0.151 4.151 16 C -0.146 4.146 17 C -0.118 4.118 18 H 0.088 0.912 19 C 0.008 3.992 20 H 0.061 0.939 21 H 0.056 0.944 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.091 0.909 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.056 0.944 32 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -1.694 -8.576 3.153 9.293 hybrid contribution 0.462 0.918 -0.130 1.036 sum -1.232 -7.658 3.024 8.325 Atomic orbital electron populations 1.69963 1.04808 1.24804 1.57459 1.24769 0.95685 0.97486 1.02670 0.86154 0.78582 0.83772 0.77498 1.21745 1.21756 1.20788 1.19065 0.90360 0.82560 1.43231 0.90625 1.44717 1.01755 0.99747 1.87028 1.21161 0.84147 0.87811 1.00744 1.21751 0.93617 1.00005 0.97800 0.92685 1.20879 0.97634 0.99605 0.95409 1.21582 0.97085 1.01480 0.95594 1.21477 0.95965 0.99016 0.98669 1.21432 0.95917 1.02957 0.94259 1.22362 0.96678 0.97396 0.95351 0.91163 1.21908 0.94552 0.86516 0.96248 0.93905 0.94440 0.93212 0.92509 0.93295 0.90855 0.93087 0.92932 0.92973 0.93548 0.90111 0.94413 0.96838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.59 10.37 55.49 0.58 -27.01 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.22 -6.39 10.29 -15.06 -0.16 -6.54 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.61 -15.90 2.86 -168.97 -0.48 -16.38 16 10 C 0.19 4.61 4.24 -3.03 -0.01 4.59 16 11 C -0.11 -2.20 2.78 -90.61 -0.25 -2.45 16 12 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 13 C -0.10 -1.63 5.37 -27.80 -0.15 -1.78 16 14 C -0.12 -1.96 5.80 -26.67 -0.15 -2.11 16 15 C -0.11 -1.76 5.93 -26.78 -0.16 -1.92 16 16 C -0.11 -1.93 4.81 -26.93 -0.13 -2.06 16 17 C -0.10 -1.82 3.76 -88.36 -0.33 -2.15 16 18 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 19 C 0.13 2.90 6.50 -1.78 -0.01 2.89 16 20 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 21 H 0.04 1.05 7.50 -51.93 -0.39 0.66 16 22 H 0.05 1.34 5.65 -51.92 -0.29 1.05 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 1.40 6.60 -51.93 -0.34 1.05 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.75 7.01 -51.93 -0.36 1.38 16 31 H 0.04 0.80 8.02 -51.93 -0.42 0.38 16 32 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 243.29 15.07 3.67 3.67 Total: -1.00 -29.86 243.29 -7.88 -37.73 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -5.16 Total: -3.62 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -1.45 Total: -11.91 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 0.09 Total: -43.40 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.86 -7.88 -37.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075546407.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.632 kcal (2) G-P(sol) polarization free energy of solvation -29.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds