Wall clock time and date at job start Sun Mar 29 2020 21:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99963 * 2 1 4 4 H 1.48496 * 109.47176 * 270.00614 * 3 2 1 5 5 H 1.48497 * 109.46634 * 30.00568 * 3 2 1 6 6 H 1.48495 * 109.46772 * 150.00471 * 3 2 1 7 7 C 1.38812 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00239 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00053 * 359.97438 * 7 2 1 10 10 C 1.47800 * 125.92694 * 359.85516 * 9 7 2 11 11 C 1.53582 * 106.38165 * 180.49431 * 10 9 7 12 12 H 1.08996 * 108.82379 * 269.28643 * 11 10 9 13 13 C 1.51038 * 112.71544 * 147.82570 * 11 10 9 14 14 C 1.52840 * 111.45701 * 296.17865 * 13 11 10 15 15 C 1.53277 * 108.30023 * 300.72890 * 14 13 11 16 16 C 1.52634 * 108.56684 * 63.46565 * 15 14 13 17 17 C 1.52974 * 110.87092 * 297.87653 * 16 15 14 18 18 H 1.09001 * 113.18665 * 286.59158 * 17 16 15 19 19 C 1.47752 * 125.82374 * 180.02562 * 9 7 2 20 20 H 0.96998 * 120.00251 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.97000 * 61.30885 * 10 9 7 22 22 H 1.09009 * 110.21020 * 299.80789 * 10 9 7 23 23 H 1.08993 * 109.08428 * 56.69225 * 13 11 10 24 24 H 1.08999 * 109.08030 * 175.74027 * 13 11 10 25 25 H 1.08994 * 109.70015 * 60.43677 * 14 13 11 26 26 H 1.09001 * 109.69228 * 181.02927 * 14 13 11 27 27 H 1.08998 * 109.61622 * 183.19114 * 15 14 13 28 28 H 1.08999 * 109.61951 * 303.74454 * 15 14 13 29 29 H 1.09001 * 109.19786 * 177.51459 * 16 15 14 30 30 H 1.08999 * 109.19416 * 58.23283 * 16 15 14 31 31 H 1.09002 * 110.50178 * 35.36433 * 19 9 7 32 32 H 1.09000 * 110.50158 * 272.81406 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4401 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1445 -2.5408 0.0030 11 6 -0.4231 -4.0511 0.0142 12 1 -0.5013 -4.4019 -1.0148 13 6 -1.6874 -4.4054 0.7608 14 6 -1.5815 -4.0448 2.2422 15 6 -0.3968 -4.8114 2.8407 16 6 0.8835 -4.3374 2.1582 17 6 0.8475 -4.6430 0.6597 18 1 0.9825 -5.7008 0.4341 19 6 1.9307 -3.7360 -0.0005 20 1 -0.4850 0.8400 0.0004 21 1 -0.5679 -2.0887 -0.8939 22 1 -0.5693 -2.0752 0.8924 23 1 -2.5246 -3.8636 0.3210 24 1 -1.8679 -5.4763 0.6677 25 1 -1.4169 -2.9727 2.3486 26 1 -2.5001 -4.3287 2.7559 27 1 -0.3360 -4.6136 3.9109 28 1 -0.5285 -5.8799 2.6701 29 1 1.7377 -4.8443 2.6070 30 1 0.9894 -3.2622 2.3023 31 1 2.8467 -3.7433 0.5904 32 1 2.1328 -4.0637 -1.0203 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075546407.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:25:25 Heat of formation + Delta-G solvation = -11.477761 kcal Electronic energy + Delta-G solvation = -13126.240978 eV Core-core repulsion = 11085.705348 eV Total energy + Delta-G solvation = -2040.535630 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.69507 -36.30643 -33.87851 -32.32650 -30.77851 -27.71076 -26.79768 -23.62003 -22.66808 -21.56817 -19.40398 -18.81308 -16.86207 -16.45065 -15.71263 -15.29622 -15.04773 -14.79673 -13.81069 -13.77936 -13.39415 -12.95566 -12.92882 -12.60008 -12.58852 -12.23485 -12.16105 -11.89735 -11.72429 -11.59979 -11.00145 -10.77328 -10.72373 -10.58882 -8.84664 -7.83594 -5.17756 1.42989 1.45420 1.53975 2.49430 3.34264 3.66423 3.83656 3.91900 4.01907 4.36529 4.44533 4.46478 4.62115 4.70974 4.77320 4.80588 4.97881 4.98851 5.09427 5.17940 5.22253 5.37480 5.38952 5.46621 5.53721 5.55855 5.72854 5.81864 5.90218 6.21598 7.11154 7.79366 8.47285 9.27206 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.050427 B = 0.011919 C = 0.011268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.129431 B = 2348.554942 C = 2484.418937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.069 4.069 3 Si 0.977 3.023 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.240 4.240 8 H 0.079 0.921 9 N -0.628 5.628 10 C 0.196 3.804 11 C -0.105 4.105 12 H 0.060 0.940 13 C -0.095 4.095 14 C -0.120 4.120 15 C -0.107 4.107 16 C -0.106 4.106 17 C -0.082 4.082 18 H 0.113 0.887 19 C 0.125 3.875 20 H 0.245 0.755 21 H -0.009 1.009 22 H 0.019 0.981 23 H 0.050 0.950 24 H 0.086 0.914 25 H 0.031 0.969 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.031 0.969 31 H 0.041 0.959 32 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.336 -10.999 3.806 11.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.262 4.262 3 Si 0.805 3.195 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.369 4.369 8 H 0.097 0.903 9 N -0.354 5.354 10 C 0.072 3.928 11 C -0.124 4.124 12 H 0.078 0.922 13 C -0.132 4.132 14 C -0.157 4.157 15 C -0.144 4.144 16 C -0.144 4.144 17 C -0.101 4.101 18 H 0.131 0.869 19 C 0.000 4.000 20 H 0.054 0.946 21 H 0.010 0.990 22 H 0.037 0.963 23 H 0.068 0.932 24 H 0.105 0.895 25 H 0.050 0.950 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -1.351 -10.778 3.802 11.509 hybrid contribution 0.396 1.586 -0.351 1.672 sum -0.956 -9.192 3.451 9.865 Atomic orbital electron populations 1.70202 1.06283 1.25038 1.58592 1.25635 0.96608 1.00929 1.02994 0.85095 0.77678 0.79262 0.77436 1.21379 1.22038 1.19353 1.19469 0.90888 0.83998 1.42556 0.90293 1.45028 1.02605 1.00972 1.86804 1.20896 0.83407 0.91517 0.97011 1.21685 0.95974 0.95696 0.99045 0.92192 1.20888 0.95571 1.01728 0.95053 1.21568 0.99079 0.99159 0.95932 1.21455 0.93630 1.00407 0.98892 1.21376 0.98440 1.00134 0.94445 1.22407 0.93894 0.98689 0.95118 0.86946 1.22150 0.95798 0.85197 0.96903 0.94587 0.99036 0.96322 0.93169 0.89516 0.95039 0.90283 0.91833 0.89786 0.91524 0.95028 0.94064 0.96396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.61 10.37 21.65 0.22 -59.38 16 2 C -0.07 -4.09 5.49 84.86 0.47 -3.62 16 3 Si 0.98 47.46 29.55 68.60 2.03 49.49 16 4 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 5 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 7 C -0.24 -14.07 10.29 84.03 0.87 -13.21 16 8 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 9 N -0.63 -33.82 2.86 -688.50 -1.97 -35.79 16 10 C 0.20 10.15 4.24 86.33 0.37 10.51 16 11 C -0.10 -3.98 2.78 -10.79 -0.03 -4.01 16 12 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 13 C -0.09 -2.94 5.37 29.90 0.16 -2.78 16 14 C -0.12 -3.70 5.80 30.63 0.18 -3.52 16 15 C -0.11 -2.92 5.93 30.57 0.18 -2.74 16 16 C -0.11 -3.58 4.81 30.46 0.15 -3.43 16 17 C -0.08 -2.81 3.76 -9.33 -0.04 -2.84 16 18 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 19 C 0.12 5.30 6.50 87.16 0.57 5.87 16 20 H 0.24 14.90 8.31 -92.71 -0.77 14.13 16 21 H -0.01 -0.51 7.50 -2.39 -0.02 -0.53 16 22 H 0.02 1.07 5.65 -2.38 -0.01 1.05 16 23 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.03 1.22 6.60 -2.39 -0.02 1.21 16 26 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.03 1.37 7.01 -2.39 -0.02 1.35 16 31 H 0.04 1.70 8.02 -2.39 -0.02 1.69 16 32 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -67.59 243.29 4.21 -63.38 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: 1.07 Total: 2.07 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: 2.86 Total: -19.77 kcal Atomic # 7 Polarization: -93.42 SS G_CDS: -1.75 Total: -95.17 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -67.59 4.21 -63.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075546407.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.898 kcal (2) G-P(sol) polarization free energy of solvation -67.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds