Wall clock time and date at job start Sun Mar 29 2020 21:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 119.99783 * 2 1 4 4 H 1.48503 * 109.47050 * 274.98378 * 3 2 1 5 5 H 1.48500 * 109.47259 * 34.98337 * 3 2 1 6 6 H 1.48501 * 109.47066 * 154.98485 * 3 2 1 7 7 C 1.38807 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00121 * 187.28445 * 7 2 1 9 9 N 1.36939 * 120.00421 * 7.27755 * 7 2 1 10 10 C 1.48416 * 125.87243 * 355.57489 * 9 7 2 11 11 C 1.52534 * 105.69623 * 176.84382 * 10 9 7 12 12 H 1.09000 * 110.80161 * 272.84621 * 11 10 9 13 13 C 1.51522 * 117.04623 * 145.63160 * 11 10 9 14 14 C 1.53814 * 107.10016 * 181.84099 * 13 11 10 15 15 C 1.52532 * 111.55596 * 57.33941 * 14 13 11 16 16 C 1.52411 * 111.79044 * 306.11615 * 15 14 13 17 17 C 1.51705 * 107.71380 * 57.33000 * 16 15 14 18 18 H 1.09001 * 110.91871 * 56.28896 * 17 16 15 19 19 C 1.48750 * 125.87803 * 175.52939 * 9 7 2 20 20 H 0.96994 * 120.00279 * 0.02562 * 1 2 3 21 21 H 1.09005 * 110.20352 * 57.79126 * 10 9 7 22 22 H 1.08999 * 110.20591 * 295.90676 * 10 9 7 23 23 H 1.09006 * 109.92441 * 62.44755 * 13 11 10 24 24 H 1.08998 * 109.92977 * 301.24391 * 13 11 10 25 25 H 1.08999 * 109.04950 * 177.85444 * 14 13 11 26 26 H 1.08995 * 109.04870 * 296.82656 * 14 13 11 27 27 H 1.09000 * 109.04638 * 66.47266 * 15 14 13 28 28 H 1.09006 * 109.04063 * 185.34290 * 15 14 13 29 29 H 1.08993 * 109.22580 * 297.96152 * 16 15 14 30 30 H 1.09007 * 110.08168 * 177.18216 * 16 15 14 31 31 H 1.09001 * 110.67897 * 36.21108 * 19 9 7 32 32 H 1.08998 * 110.68210 * 273.03949 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5042 2.6200 0.8027 6 1 3.5964 1.4121 0.5920 7 6 2.0102 -1.2021 0.0005 8 1 3.0837 -1.2059 0.1191 9 7 1.3339 -2.3834 -0.1492 10 6 -0.1401 -2.5376 -0.2284 11 6 -0.3871 -4.0229 -0.4720 12 1 -0.3625 -4.2497 -1.5378 13 6 -1.6252 -4.6279 0.1582 14 6 -1.6241 -6.1260 -0.1904 15 6 -0.3499 -6.8125 0.2909 16 6 0.9006 -6.1088 -0.2232 17 6 0.8413 -4.6654 0.2399 18 1 0.7430 -4.6082 1.3240 19 6 1.9501 -3.7326 -0.2613 20 1 -0.4850 0.8400 -0.0004 21 1 -0.5362 -1.9494 -1.0563 22 1 -0.6020 -2.2278 0.7090 23 1 -2.5185 -4.1527 -0.2474 24 1 -1.5927 -4.4980 1.2399 25 1 -2.4843 -6.6015 0.2809 26 1 -1.7030 -6.2397 -1.2715 27 1 -0.3330 -6.8075 1.3807 28 1 -0.3483 -7.8449 -0.0587 29 1 0.9132 -6.1495 -1.3123 30 1 1.7926 -6.5911 0.1768 31 1 2.8322 -3.8069 0.3747 32 1 2.2016 -3.9560 -1.2980 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075546410.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:25:27 Heat of formation + Delta-G solvation = 6.254390 kcal Electronic energy + Delta-G solvation = -12845.148259 eV Core-core repulsion = 10805.381552 eV Total energy + Delta-G solvation = -2039.766706 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.09431 -34.96639 -31.94917 -30.96430 -28.94291 -26.18594 -24.96581 -21.81255 -20.53720 -19.72135 -19.28035 -16.64183 -14.86861 -14.34984 -14.32076 -14.05396 -13.56445 -13.23728 -12.28005 -12.03514 -11.71672 -11.66934 -11.16564 -10.98259 -10.81173 -10.72485 -10.48667 -10.31760 -9.95655 -9.77474 -9.74409 -9.35732 -9.07716 -8.51263 -6.74253 -5.63962 -2.95076 3.44752 3.49607 3.51754 4.55926 5.02639 5.06847 5.17347 5.46613 5.52965 5.66416 5.80649 5.85930 5.89128 5.93214 5.99622 6.29528 6.36417 6.40015 6.42927 6.48977 6.54973 6.66342 6.73410 6.77284 6.97592 7.17272 7.63409 7.74581 7.90647 8.30656 9.27893 9.89070 10.59064 11.48693 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.074044 B = 0.009794 C = 0.008872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.061107 B = 2858.249837 C = 3155.341074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.011 4.011 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.224 4.224 8 H 0.077 0.923 9 N -0.612 5.612 10 C 0.188 3.812 11 C -0.117 4.117 12 H 0.061 0.939 13 C -0.102 4.102 14 C -0.116 4.116 15 C -0.114 4.114 16 C -0.104 4.104 17 C -0.108 4.108 18 H 0.073 0.927 19 C 0.141 3.859 20 H 0.251 0.749 21 H 0.048 0.952 22 H 0.037 0.963 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.037 0.963 32 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.662 -11.235 -0.159 11.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.353 4.353 8 H 0.095 0.905 9 N -0.338 5.338 10 C 0.064 3.936 11 C -0.136 4.136 12 H 0.080 0.920 13 C -0.140 4.140 14 C -0.153 4.153 15 C -0.152 4.152 16 C -0.142 4.142 17 C -0.127 4.127 18 H 0.091 0.909 19 C 0.015 3.985 20 H 0.061 0.939 21 H 0.066 0.934 22 H 0.055 0.945 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -1.705 -10.999 -0.138 11.132 hybrid contribution 0.424 0.930 -0.015 1.022 sum -1.281 -10.069 -0.153 10.152 Atomic orbital electron populations 1.69986 1.04862 1.24829 1.57236 1.24797 0.95698 0.97536 1.02671 0.86135 0.78655 0.83806 0.77437 1.21733 1.21849 1.20710 1.19094 0.91105 0.82752 1.42318 0.90536 1.45192 1.01642 1.00726 1.86280 1.20880 0.84191 0.88277 1.00280 1.22229 0.94147 0.98706 0.98531 0.92015 1.21278 0.98077 0.94069 1.00537 1.21541 0.96948 0.96149 1.00677 1.21264 0.94976 0.98322 1.00643 1.21087 0.96884 0.95697 1.00499 1.22174 0.97589 0.93149 0.99777 0.90910 1.21384 0.94148 0.86036 0.96906 0.93902 0.93401 0.94475 0.92240 0.92084 0.92818 0.92605 0.92586 0.92842 0.92255 0.92506 0.94480 0.96245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.93 10.43 55.49 0.58 -27.35 16 2 C -0.01 -0.32 5.48 -17.43 -0.10 -0.42 16 3 Si 0.91 22.71 29.56 -169.99 -5.02 17.68 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.22 -6.51 10.30 -15.06 -0.16 -6.66 16 8 H 0.08 2.14 7.84 -52.48 -0.41 1.73 16 9 N -0.61 -16.41 3.45 -169.92 -0.59 -16.99 16 10 C 0.19 4.75 5.07 -3.22 -0.02 4.73 16 11 C -0.12 -2.28 2.33 -90.09 -0.21 -2.49 16 12 H 0.06 1.20 7.94 -51.93 -0.41 0.79 16 13 C -0.10 -1.66 5.68 -27.06 -0.15 -1.81 16 14 C -0.12 -1.55 5.84 -26.55 -0.16 -1.71 16 15 C -0.11 -1.48 5.79 -27.27 -0.16 -1.64 16 16 C -0.10 -1.52 5.62 -27.69 -0.16 -1.67 16 17 C -0.11 -1.99 2.53 -89.59 -0.23 -2.21 16 18 H 0.07 1.41 8.06 -51.93 -0.42 0.99 16 19 C 0.14 3.07 6.90 -2.63 -0.02 3.05 16 20 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 21 H 0.05 1.34 7.28 -51.93 -0.38 0.96 16 22 H 0.04 1.03 7.66 -51.93 -0.40 0.63 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 24 H 0.06 1.02 8.05 -51.93 -0.42 0.60 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.86 7.99 -51.93 -0.41 0.45 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 248.56 15.07 3.75 3.75 Total: -1.00 -30.55 248.56 -8.00 -38.55 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: -5.37 Total: -4.80 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -1.34 Total: -10.84 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: -0.01 Total: -44.34 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -30.55 -8.00 -38.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075546410.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.808 kcal (2) G-P(sol) polarization free energy of solvation -30.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds