Wall clock time and date at job start Sun Mar 29 2020 21:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34893 * 117.00493 * 2 1 4 4 O 1.21590 * 119.99407 * 0.02562 * 3 2 1 5 5 C 1.46952 * 120.00411 * 180.02562 * 3 2 1 6 6 N 1.34194 * 126.46023 * 0.02562 * 5 3 2 7 7 C 1.30611 * 109.87506 * 179.97438 * 6 5 3 8 8 N 1.35638 * 110.01281 * 0.23448 * 7 6 5 9 9 H 0.97008 * 126.34797 * 179.76615 * 8 7 6 10 10 C 1.38027 * 107.29776 * 359.63009 * 8 7 6 11 11 C 1.39402 * 127.13460 * 180.12696 * 10 8 7 12 12 H 1.07994 * 120.00312 * 180.26180 * 11 10 8 13 13 C 1.40623 * 119.99792 * 0.27254 * 11 10 8 14 14 N 1.30488 * 120.00054 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99719 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47201 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47256 * 119.99679 * 15 13 11 18 18 H 1.48507 * 109.46625 * 239.99302 * 15 13 11 19 19 H 1.09003 * 109.47554 * 179.97438 * 1 2 3 20 20 H 1.09005 * 109.47177 * 299.99875 * 1 2 3 21 21 H 1.09003 * 109.47351 * 59.99740 * 1 2 3 22 22 H 1.08002 * 124.98950 * 179.97438 * 7 6 5 23 23 H 0.96997 * 120.00250 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4022 2.2216 0.0005 5 6 3.5319 1.2787 -0.0006 6 7 4.3848 0.2427 -0.0016 7 6 5.6153 0.6805 -0.0024 8 7 5.6255 2.0368 0.0033 9 1 6.4111 2.6059 0.0072 10 6 4.3108 2.4571 -0.0006 11 6 3.8476 3.7719 0.0004 12 1 2.7860 3.9705 0.0012 13 6 4.7626 4.8397 0.0002 14 7 6.0452 4.5998 -0.0005 15 14 4.1419 6.6015 0.0008 16 1 2.6569 6.6032 0.0009 17 1 4.6382 7.3008 1.2132 18 1 4.6373 7.3012 -1.2118 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 6.4954 0.0544 -0.0029 23 1 6.6764 5.3363 -0.0003 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075546580.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:35 Heat of formation + Delta-G solvation = -55.708993 kcal Electronic energy + Delta-G solvation = -12069.349546 eV Core-core repulsion = 9689.803805 eV Total energy + Delta-G solvation = -2379.545740 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 196.063 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.03875 -38.62008 -35.08701 -34.09801 -30.73768 -29.33606 -27.18309 -25.25341 -22.01002 -20.37582 -18.92192 -18.17843 -16.36932 -15.68681 -15.21810 -15.01056 -14.47119 -13.30457 -13.02289 -12.76605 -12.40765 -12.09236 -11.84418 -11.49314 -11.22107 -10.87946 -10.43576 -9.81289 -9.79303 -9.23240 -8.62217 -8.52441 -7.46291 -7.30319 -4.71084 2.63104 2.93594 3.04448 3.13501 3.71556 3.71927 3.90049 4.60503 4.96101 5.19897 5.72977 5.80010 5.85857 6.02821 6.53316 6.74796 6.90711 7.38782 7.53535 7.62127 8.30809 8.35830 8.47844 9.02598 9.33431 9.62473 9.75548 Molecular weight = 196.06amu Principal moments of inertia in cm(-1) A = 0.038270 B = 0.013466 C = 0.010015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.472666 B = 2078.823263 C = 2795.150812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.358 6.358 3 C 0.551 3.449 4 O -0.545 6.545 5 C -0.213 4.213 6 N -0.452 5.452 7 C 0.102 3.898 8 N -0.592 5.592 9 H 0.426 0.574 10 C 0.273 3.727 11 C -0.411 4.411 12 H 0.121 0.879 13 C 0.068 3.932 14 N -0.821 5.821 15 Si 0.938 3.062 16 H -0.252 1.252 17 H -0.270 1.270 18 H -0.270 1.270 19 H 0.087 0.913 20 H 0.052 0.948 21 H 0.052 0.948 22 H 0.180 0.820 23 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.034 -0.075 0.007 1.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.276 6.276 3 C 0.404 3.596 4 O -0.438 6.438 5 C -0.335 4.335 6 N -0.172 5.172 7 C -0.181 4.181 8 N -0.212 5.212 9 H 0.273 0.727 10 C 0.153 3.847 11 C -0.445 4.445 12 H 0.139 0.861 13 C -0.150 4.150 14 N -0.450 5.450 15 Si 0.762 3.238 16 H -0.175 1.175 17 H -0.195 1.195 18 H -0.195 1.195 19 H 0.105 0.895 20 H 0.071 0.929 21 H 0.070 0.930 22 H 0.197 0.803 23 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.366 -0.641 0.009 1.509 hybrid contribution 0.477 1.755 0.001 1.819 sum -0.889 1.114 0.010 1.426 Atomic orbital electron populations 1.22981 0.79108 1.01941 1.01509 1.86697 1.20818 1.34229 1.85817 1.19673 0.87107 0.80163 0.72701 1.90700 1.66206 1.35785 1.51098 1.18851 0.88839 0.89625 1.36152 1.69502 0.99609 1.32226 1.15830 1.24104 0.96290 0.83033 1.14648 1.43751 1.08608 1.07052 1.61773 0.72708 1.18561 0.81997 0.93059 0.91058 1.19535 0.96917 0.87428 1.40645 0.86079 1.26349 0.94086 1.03792 0.90803 1.68795 1.03069 1.36255 1.36928 0.85722 0.81016 0.78445 0.78664 1.17510 1.19497 1.19499 0.89492 0.92944 0.92951 0.80294 0.89473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 10.57 101.05 1.07 1.75 14 2 O -0.36 -8.36 10.58 -41.02 -0.43 -8.79 14 3 C 0.55 14.62 7.95 34.26 0.27 14.90 14 4 O -0.54 -14.87 14.75 -19.33 -0.29 -15.15 14 5 C -0.21 -5.90 7.13 -82.16 -0.59 -6.49 14 6 N -0.45 -11.85 11.21 -10.27 -0.12 -11.96 14 7 C 0.10 2.35 12.97 -89.74 -1.16 1.19 14 8 N -0.59 -14.49 5.82 -11.43 -0.07 -14.55 14 9 H 0.43 9.83 6.44 -40.82 -0.26 9.57 14 10 C 0.27 7.46 6.77 -83.50 -0.57 6.90 14 11 C -0.41 -10.98 8.96 -38.25 -0.34 -11.32 14 12 H 0.12 3.34 6.14 -52.49 -0.32 3.02 14 13 C 0.07 1.60 5.51 -17.22 -0.09 1.51 14 14 N -0.82 -18.89 10.77 55.58 0.60 -18.29 14 15 Si 0.94 18.08 29.57 -169.99 -5.03 13.06 14 16 H -0.25 -4.99 7.11 56.52 0.40 -4.59 14 17 H -0.27 -5.04 7.11 56.52 0.40 -4.64 14 18 H -0.27 -5.04 7.11 56.52 0.40 -4.64 14 19 H 0.09 1.17 8.14 -51.93 -0.42 0.74 14 20 H 0.05 0.87 8.14 -51.93 -0.42 0.45 14 21 H 0.05 0.87 8.14 -51.93 -0.42 0.45 14 22 H 0.18 3.25 8.06 -52.49 -0.42 2.83 14 23 H 0.29 6.02 8.29 -40.82 -0.34 5.68 14 LS Contribution 217.22 15.07 3.27 3.27 Total: -1.00 -30.24 217.22 -4.88 -35.11 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -1.41 Total: 8.87 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -1.41 Total: 8.43 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 0.42 Total: -44.81 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.72 Total: -23.94 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -30.24 -4.88 -35.11 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075546580.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.595 kcal (2) G-P(sol) polarization free energy of solvation -30.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds