Wall clock time and date at job start Sun Mar 29 2020 21:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46821 * 2 1 4 4 H 1.09000 * 109.47360 * 305.00433 * 3 2 1 5 5 O 1.42905 * 109.46812 * 65.00469 * 3 2 1 6 6 C 1.50699 * 109.47155 * 185.00115 * 3 2 1 7 7 C 1.34943 * 125.48672 * 124.71771 * 6 3 2 8 8 N 1.36671 * 106.72938 * 179.84298 * 7 6 3 9 9 C 1.37559 * 126.88867 * 180.15004 * 8 7 6 10 10 H 1.08002 * 120.00163 * 0.34012 * 9 8 7 11 11 C 1.39007 * 120.00255 * 180.33617 * 9 8 7 12 12 N 1.31252 * 120.00044 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00420 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46990 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46938 * 119.99835 * 13 11 9 16 16 H 1.48490 * 109.47749 * 240.00134 * 13 11 9 17 17 N 1.40331 * 106.22318 * 0.41521 * 8 7 6 18 18 N 1.28754 * 108.02981 * 359.73408 * 17 8 7 19 19 H 1.09001 * 109.47445 * 299.99196 * 1 2 3 20 20 H 1.09002 * 109.47468 * 60.00050 * 1 2 3 21 21 H 1.09004 * 109.46792 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46920 * 240.00782 * 2 1 3 23 23 H 1.08998 * 109.47695 * 120.00404 * 2 1 3 24 24 H 0.96691 * 114.00079 * 59.99598 * 5 3 2 25 25 H 1.07998 * 126.63771 * 0.02562 * 7 6 3 26 26 H 0.97004 * 120.00424 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 8 1.6619 2.0814 1.2212 6 6 3.5418 1.4445 -0.1239 7 6 4.2490 2.0972 -1.0698 8 7 5.5683 1.8410 -0.8214 9 6 6.6484 2.3063 -1.5351 10 1 6.4949 2.9500 -2.3886 11 6 7.9373 1.9480 -1.1577 12 7 8.1239 1.1654 -0.1207 13 14 9.4040 2.5792 -2.1272 14 1 8.9283 3.4368 -3.2423 15 1 10.2837 3.3738 -1.2328 16 1 10.1661 1.4294 -2.6769 17 7 5.5999 1.0032 0.3039 18 7 4.3863 0.7961 0.6808 19 1 -0.3634 0.5137 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5137 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 2.0140 1.6542 2.0139 25 1 3.8499 2.7068 -1.8669 26 1 9.0234 0.9150 0.1425 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082018518.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:10 Heat of formation + Delta-G solvation = 24.191189 kcal Electronic energy + Delta-G solvation = -12262.370704 eV Core-core repulsion = 9956.696879 eV Total energy + Delta-G solvation = -2305.673825 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.17701 -36.88568 -34.06293 -32.29256 -31.31385 -29.34913 -26.06506 -24.66477 -21.74571 -20.90832 -19.78246 -17.76397 -15.74424 -15.53961 -15.01986 -14.61084 -13.94724 -13.72670 -13.16361 -12.65988 -11.99285 -11.98439 -11.71654 -11.48076 -11.40032 -10.72750 -10.57207 -10.55962 -10.03450 -9.86663 -9.35128 -9.13142 -8.72939 -7.46871 -6.84857 -4.65501 2.79617 2.94140 3.01285 3.30381 3.66709 3.99678 4.61201 4.78435 5.15649 5.32660 5.50995 5.60928 5.90061 6.06965 6.17051 6.28473 6.30936 6.53242 6.65602 6.75855 6.95069 7.09101 7.73907 7.87761 8.23138 8.47853 9.09075 10.11675 10.16119 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.089483 B = 0.008205 C = 0.008025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.832628 B = 3411.851282 C = 3488.226203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.146 4.146 3 C 0.207 3.793 4 H 0.095 0.905 5 O -0.567 6.567 6 C -0.109 4.109 7 C -0.108 4.108 8 N -0.148 5.148 9 C -0.315 4.315 10 H 0.122 0.878 11 C 0.047 3.953 12 N -0.760 5.760 13 Si 0.943 3.057 14 H -0.260 1.260 15 H -0.270 1.270 16 H -0.271 1.271 17 N -0.091 5.091 18 N -0.323 5.323 19 H 0.057 0.943 20 H 0.049 0.951 21 H 0.047 0.953 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.375 0.625 25 H 0.155 0.845 26 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.601 0.699 -2.964 6.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.184 4.184 3 C 0.146 3.854 4 H 0.113 0.887 5 O -0.371 6.371 6 C -0.256 4.256 7 C -0.263 4.263 8 N 0.081 4.919 9 C -0.452 4.452 10 H 0.139 0.861 11 C -0.173 4.173 12 N -0.386 5.386 13 Si 0.766 3.234 14 H -0.184 1.184 15 H -0.196 1.196 16 H -0.196 1.196 17 N -0.069 5.069 18 N -0.184 5.184 19 H 0.076 0.924 20 H 0.068 0.932 21 H 0.066 0.934 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.222 0.778 25 H 0.173 0.827 26 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.865 0.143 -2.163 5.326 hybrid contribution 0.564 0.512 -0.995 1.253 sum -4.301 0.655 -3.158 5.376 Atomic orbital electron populations 1.21732 0.96068 1.00741 1.01844 1.22131 0.95301 0.97887 1.03084 1.19819 0.86899 0.91843 0.86808 0.88673 1.86425 1.76415 1.58147 1.16156 1.21438 0.96580 1.07687 0.99935 1.22347 0.84821 1.12447 1.06644 1.46720 1.04112 1.24332 1.16712 1.20216 0.83096 1.30246 1.11609 0.86087 1.25793 0.99886 0.95354 0.96256 1.70150 1.24053 1.24469 1.19978 0.85622 0.79329 0.79091 0.79356 1.18361 1.19552 1.19563 1.82527 1.10154 1.13752 1.00427 1.73931 0.98477 1.21085 1.24859 0.92364 0.93151 0.93419 0.91549 0.91286 0.77760 0.82738 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.81 37.16 0.36 -1.58 15 2 C -0.15 -2.39 5.57 -26.73 -0.15 -2.54 15 3 C 0.21 3.86 3.45 -27.88 -0.10 3.76 15 4 H 0.10 1.62 8.10 -51.93 -0.42 1.20 15 5 O -0.57 -10.50 12.86 -35.23 -0.45 -10.95 15 6 C -0.11 -2.57 5.97 -83.06 -0.50 -3.06 15 7 C -0.11 -2.62 11.45 -16.56 -0.19 -2.81 15 8 N -0.15 -4.08 3.78 -11.48 -0.04 -4.12 15 9 C -0.32 -8.18 10.31 -14.70 -0.15 -8.34 15 10 H 0.12 2.79 7.83 -52.49 -0.41 2.38 15 11 C 0.05 1.17 5.50 -17.51 -0.10 1.07 15 12 N -0.76 -20.62 11.89 55.50 0.66 -19.96 15 13 Si 0.94 18.13 29.55 -169.99 -5.02 13.11 15 14 H -0.26 -4.75 7.11 56.52 0.40 -4.34 15 15 H -0.27 -5.15 7.11 56.52 0.40 -4.75 15 16 H -0.27 -5.14 7.11 56.52 0.40 -4.73 15 17 N -0.09 -2.70 11.73 60.35 0.71 -1.99 15 18 N -0.32 -8.66 12.29 33.16 0.41 -8.25 15 19 H 0.06 0.77 7.82 -51.93 -0.41 0.36 15 20 H 0.05 0.62 8.14 -51.93 -0.42 0.20 15 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 15 22 H 0.07 1.12 8.14 -51.93 -0.42 0.69 15 23 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 24 H 0.38 6.37 9.04 45.56 0.41 6.78 15 25 H 0.16 3.14 8.06 -52.49 -0.42 2.72 15 26 H 0.28 6.88 8.31 -40.82 -0.34 6.54 15 LS Contribution 237.20 15.07 3.57 3.57 Total: -1.00 -31.07 237.20 -3.06 -34.13 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -2.07 Total: 7.95 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -0.81 Total: -13.50 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 1.73 Total: -34.32 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -0.45 Total: -10.95 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.02 Total: 13.11 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -31.07 -3.06 -34.13 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082018518.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.322 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds