Wall clock time and date at job start Sun Mar 29 2020 21:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08999 * 109.46969 * 2 1 4 4 O 1.42900 * 109.46889 * 239.99741 * 2 1 3 5 5 C 1.53003 * 109.46723 * 120.00042 * 2 1 3 6 6 C 1.50703 * 109.46945 * 185.00105 * 5 2 1 7 7 C 1.34936 * 125.48912 * 125.02432 * 6 5 2 8 8 N 1.36667 * 106.73016 * 179.97438 * 7 6 5 9 9 C 1.37572 * 126.88789 * 180.02562 * 8 7 6 10 10 H 1.07994 * 119.99848 * 0.02562 * 9 8 7 11 11 C 1.39013 * 120.00068 * 180.02562 * 9 8 7 12 12 N 1.31257 * 119.99898 * 359.97438 * 11 9 8 13 13 Si 1.86790 * 120.00165 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47497 * 59.99915 * 13 11 9 15 15 H 1.48503 * 109.47271 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47244 * 299.99687 * 13 11 9 17 17 N 1.40326 * 106.22819 * 0.02562 * 8 7 6 18 18 N 1.28764 * 108.02615 * 359.97438 * 17 8 7 19 19 H 1.09002 * 109.46890 * 60.00053 * 1 2 3 20 20 H 1.08999 * 109.46969 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47003 * 299.99984 * 1 2 3 22 22 H 0.96701 * 114.00185 * 60.00270 * 4 2 1 23 23 H 1.08999 * 109.47109 * 65.00085 * 5 2 1 24 24 H 1.08997 * 109.47229 * 304.99922 * 5 2 1 25 25 H 1.08007 * 126.63691 * 359.97438 * 7 6 5 26 26 H 0.96998 * 119.99828 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2493 6 6 3.5419 -0.6150 1.3128 7 6 4.2494 -0.1276 2.3533 8 7 5.5685 -0.2096 2.0051 9 6 6.6487 0.1752 2.7652 10 1 6.4952 0.5924 3.7493 11 6 7.9377 0.0270 2.2663 12 7 8.1242 -0.4806 1.0703 13 14 9.4044 0.5488 3.2985 14 1 9.4189 -0.2257 4.5654 15 1 10.6575 0.2895 2.5449 16 1 9.3031 1.9982 3.6055 17 7 5.6001 -0.7652 0.7169 18 7 4.3864 -0.9879 0.3491 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.7211 -0.2702 -1.9980 23 1 1.7516 -1.7715 1.2056 24 1 1.6054 -0.2618 2.1370 25 1 3.8505 0.2537 3.2818 26 1 9.0237 -0.5844 0.7223 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082018616.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:51 Heat of formation + Delta-G solvation = 30.416474 kcal Electronic energy + Delta-G solvation = -12229.487953 eV Core-core repulsion = 9924.084076 eV Total energy + Delta-G solvation = -2305.403876 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.95972 -36.96962 -34.03822 -32.02769 -31.11608 -29.26643 -26.24899 -24.81989 -21.40080 -20.80136 -19.44648 -17.39960 -16.75469 -15.45376 -14.59735 -14.34088 -13.82022 -13.50065 -13.04536 -12.46206 -12.08529 -11.98474 -11.80440 -11.33017 -11.25977 -11.21128 -10.61443 -10.45094 -9.75624 -9.52651 -9.31838 -8.95837 -8.57574 -7.24802 -6.73200 -4.52726 2.89193 2.99063 3.03886 3.42364 3.75068 4.25185 4.77041 4.85462 4.89499 5.33281 5.37585 5.62803 5.86079 6.03587 6.12748 6.35257 6.37801 6.44601 6.64960 6.86451 7.07914 7.21623 7.93342 8.01189 8.27618 8.61645 9.23858 10.24102 10.39658 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.092264 B = 0.008225 C = 0.007765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 303.405690 B = 3403.488616 C = 3605.090228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.109 3.891 3 H 0.047 0.953 4 O -0.541 6.541 5 C -0.011 4.011 6 C -0.076 4.076 7 C -0.121 4.121 8 N -0.152 5.152 9 C -0.318 4.318 10 H 0.118 0.882 11 C 0.047 3.953 12 N -0.762 5.762 13 Si 0.941 3.059 14 H -0.264 1.264 15 H -0.274 1.274 16 H -0.265 1.265 17 N -0.099 5.099 18 N -0.300 5.300 19 H 0.051 0.949 20 H 0.060 0.940 21 H 0.061 0.939 22 H 0.361 0.639 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.152 0.848 26 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.625 3.131 2.177 8.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.049 3.951 3 H 0.065 0.935 4 O -0.344 6.344 5 C -0.051 4.051 6 C -0.224 4.224 7 C -0.276 4.276 8 N 0.076 4.924 9 C -0.454 4.454 10 H 0.135 0.865 11 C -0.172 4.172 12 N -0.388 5.388 13 Si 0.764 3.236 14 H -0.189 1.189 15 H -0.199 1.199 16 H -0.189 1.189 17 N -0.076 5.076 18 N -0.160 5.160 19 H 0.070 0.930 20 H 0.079 0.921 21 H 0.080 0.920 22 H 0.205 0.795 23 H 0.084 0.916 24 H 0.093 0.907 25 H 0.170 0.830 26 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.272 2.166 1.201 6.743 hybrid contribution -0.166 1.081 1.116 1.562 sum -6.437 3.247 2.317 7.573 Atomic orbital electron populations 1.22571 0.97661 1.02291 1.01701 1.21706 0.90772 0.95507 0.87131 0.93467 1.86820 1.76776 1.56093 1.14676 1.19618 0.90137 1.00322 0.94994 1.20586 0.95346 1.12730 0.93707 1.22332 0.85100 1.17472 1.02647 1.46714 1.03970 1.30025 1.11645 1.20047 0.83216 1.42246 0.99936 0.86452 1.25760 0.99777 0.95389 0.96300 1.70151 1.23997 1.30506 1.14191 0.85786 0.78754 0.79642 0.79392 1.18910 1.19895 1.18932 1.82569 1.10910 1.21607 0.92490 1.74113 0.97763 1.18744 1.25352 0.92980 0.92068 0.92002 0.79497 0.91601 0.90700 0.83028 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 9.54 37.16 0.35 -1.91 15 2 C 0.11 1.81 3.57 -26.72 -0.10 1.72 15 3 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 4 O -0.54 -10.11 12.42 -35.23 -0.44 -10.55 15 5 C -0.01 -0.21 5.48 -27.88 -0.15 -0.36 15 6 C -0.08 -1.88 6.35 -83.06 -0.53 -2.41 15 7 C -0.12 -3.01 11.45 -16.57 -0.19 -3.20 15 8 N -0.15 -4.35 3.78 -11.47 -0.04 -4.39 15 9 C -0.32 -8.51 10.31 -14.69 -0.15 -8.66 15 10 H 0.12 2.77 7.83 -52.49 -0.41 2.36 15 11 C 0.05 1.21 5.50 -17.51 -0.10 1.11 15 12 N -0.76 -21.36 11.89 55.50 0.66 -20.70 15 13 Si 0.94 18.64 29.55 -169.99 -5.02 13.62 15 14 H -0.26 -5.08 7.11 56.52 0.40 -4.67 15 15 H -0.27 -5.35 7.11 56.52 0.40 -4.95 15 16 H -0.26 -5.07 7.11 56.52 0.40 -4.67 15 17 N -0.10 -3.05 11.73 60.35 0.71 -2.34 15 18 N -0.30 -8.64 11.51 33.16 0.38 -8.25 15 19 H 0.05 0.55 8.14 -51.93 -0.42 0.13 15 20 H 0.06 0.74 8.14 -51.93 -0.42 0.32 15 21 H 0.06 0.67 8.14 -51.93 -0.42 0.24 15 22 H 0.36 4.92 9.08 45.56 0.41 5.34 15 23 H 0.07 1.23 8.14 -51.93 -0.42 0.81 15 24 H 0.07 1.15 8.10 -51.93 -0.42 0.73 15 25 H 0.15 3.12 8.06 -52.48 -0.42 2.69 15 26 H 0.28 7.14 8.30 -40.82 -0.34 6.80 15 LS Contribution 236.46 15.07 3.56 3.56 Total: -1.00 -34.07 236.46 -3.14 -37.21 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -2.09 Total: 5.53 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -0.86 Total: -13.70 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 1.71 Total: -35.68 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: -0.44 Total: -10.55 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.02 Total: 13.62 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -34.07 -3.14 -37.21 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082018616.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.626 kcal (2) G-P(sol) polarization free energy of solvation -34.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds