Wall clock time and date at job start Sun Mar 29 2020 21:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36920 * 119.99985 * 2 1 4 4 H 1.08004 * 119.99901 * 174.04972 * 3 2 1 5 5 C 1.39015 * 119.99999 * 354.04069 * 3 2 1 6 6 N 1.31377 * 120.00016 * 5.08093 * 5 3 2 7 7 Si 1.86806 * 120.00057 * 185.07842 * 5 3 2 8 8 H 1.48497 * 109.47170 * 59.99867 * 7 5 3 9 9 H 1.48500 * 109.46983 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46816 * 300.00430 * 7 5 3 11 11 C 1.34774 * 120.00251 * 179.97438 * 2 1 3 12 12 O 1.21587 * 120.00539 * 186.13417 * 11 2 1 13 13 C 1.47711 * 119.99981 * 6.13744 * 11 2 1 14 14 C 1.40973 * 127.24741 * 176.43775 * 13 11 2 15 15 N 1.31128 * 105.76872 * 180.02562 * 14 13 11 16 16 N 1.28510 * 109.07531 * 359.97438 * 15 14 13 17 17 H 0.96998 * 124.43925 * 179.97438 * 16 15 14 18 18 N 1.28589 * 111.12851 * 0.02562 * 16 15 14 19 19 H 1.08999 * 109.46652 * 186.45023 * 1 2 3 20 20 H 1.08999 * 109.47079 * 306.45568 * 1 2 3 21 21 H 1.09000 * 109.46346 * 66.45799 * 1 2 3 22 22 H 0.97000 * 120.00309 * 180.02562 * 6 5 3 23 23 H 1.08000 * 127.11401 * 0.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1858 0.0000 4 1 3.2253 1.1883 0.0970 5 6 1.4602 2.3864 -0.1250 6 7 0.1465 2.3908 -0.1427 7 14 2.4016 3.9936 -0.2678 8 1 3.2715 3.9525 -1.4705 9 1 1.4418 5.1203 -0.3885 10 1 3.2398 4.1854 0.9430 11 6 2.1389 -1.1671 0.0005 12 8 3.3496 -1.1702 0.1130 13 6 1.4068 -2.4428 -0.1357 14 6 1.9575 -3.7375 -0.2236 15 7 0.9361 -4.5526 -0.3327 16 7 -0.1512 -3.8678 -0.3170 17 1 -1.0406 -4.2490 -0.3844 18 7 0.0943 -2.6108 -0.2011 19 1 -0.3632 -1.0212 0.1155 20 1 -0.3633 0.6106 0.8266 21 1 -0.3632 0.4105 -0.9422 22 1 -0.3346 3.2285 -0.2303 23 1 3.0042 -4.0031 -0.2049 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082367197.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:30 Heat of formation + Delta-G solvation = 98.583104 kcal Electronic energy + Delta-G solvation = -12189.515249 eV Core-core repulsion = 9848.952867 eV Total energy + Delta-G solvation = -2340.562382 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 196.070 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.11745 -38.16797 -34.75971 -32.46078 -31.78590 -31.19112 -26.42846 -25.03023 -22.98319 -22.47628 -19.46060 -17.92313 -16.97394 -15.93637 -15.87853 -14.62965 -14.39212 -13.98950 -13.78711 -12.57522 -12.12868 -11.63080 -11.26235 -11.24357 -10.96048 -10.45370 -10.35918 -9.98344 -9.41402 -9.16211 -9.01115 -8.66098 -7.91671 -6.30269 -3.84642 1.96920 2.49773 3.07154 3.19558 3.20935 3.25719 4.04589 4.30109 4.55925 4.92415 5.19567 5.58477 5.92526 6.17725 6.39240 6.83175 7.22771 7.39789 7.43883 7.67383 8.00423 8.39897 8.60269 9.10535 9.36828 9.93424 10.58535 Molecular weight = 196.07amu Principal moments of inertia in cm(-1) A = 0.074748 B = 0.010502 C = 0.009289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.502417 B = 2665.527108 C = 3013.670690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.413 5.413 3 C -0.296 4.296 4 H 0.109 0.891 5 C 0.028 3.972 6 N -0.871 5.871 7 Si 0.937 3.063 8 H -0.271 1.271 9 H -0.283 1.283 10 H -0.271 1.271 11 C 0.494 3.506 12 O -0.593 6.593 13 C 0.008 3.992 14 C 0.018 3.982 15 N -0.299 5.299 16 N -0.261 5.261 17 H 0.462 0.538 18 N -0.265 5.265 19 H 0.081 0.919 20 H 0.073 0.927 21 H 0.058 0.942 22 H 0.269 0.731 23 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.218 -6.230 -0.514 7.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.128 5.128 3 C -0.425 4.425 4 H 0.127 0.873 5 C -0.176 4.176 6 N -0.511 5.511 7 Si 0.763 3.237 8 H -0.196 1.196 9 H -0.208 1.208 10 H -0.196 1.196 11 C 0.281 3.719 12 O -0.479 6.479 13 C -0.156 4.156 14 C -0.167 4.167 15 N -0.140 5.140 16 N -0.092 5.092 17 H 0.312 0.688 18 N -0.112 5.112 19 H 0.098 0.902 20 H 0.092 0.908 21 H 0.077 0.923 22 H 0.079 0.921 23 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -3.937 -6.553 -0.558 7.665 hybrid contribution 0.422 1.004 -0.089 1.093 sum -3.515 -5.549 -0.647 6.600 Atomic orbital electron populations 1.22600 0.79245 1.00814 1.03633 1.43661 1.07003 1.04392 1.57750 1.19921 0.93822 0.81969 1.46753 0.87292 1.25466 0.95844 1.00094 0.96226 1.70245 1.06054 1.27595 1.47175 0.85815 0.78804 0.79681 0.79363 1.19606 1.20779 1.19587 1.16390 0.86267 0.80868 0.88379 1.90612 1.12850 1.85626 1.58778 1.23764 0.88512 0.97689 1.05619 1.24699 0.99564 0.88646 1.03783 1.73805 0.93562 1.26795 1.19850 1.46099 1.08912 1.02237 1.51969 0.68794 1.74598 1.17696 0.99392 1.19520 0.90227 0.90819 0.92326 0.92059 0.78103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.97 8.66 59.85 0.52 2.49 14 2 N -0.41 -11.07 3.02 -123.32 -0.37 -11.44 14 3 C -0.30 -8.28 9.56 -14.99 -0.14 -8.43 14 4 H 0.11 3.13 7.17 -52.48 -0.38 2.75 14 5 C 0.03 0.72 5.46 -17.46 -0.10 0.63 14 6 N -0.87 -22.82 9.44 55.50 0.52 -22.29 14 7 Si 0.94 20.43 29.56 -169.99 -5.02 15.41 14 8 H -0.27 -5.89 7.11 56.52 0.40 -5.49 14 9 H -0.28 -5.99 7.11 56.52 0.40 -5.58 14 10 H -0.27 -5.85 7.11 56.52 0.40 -5.45 14 11 C 0.49 12.78 7.62 -12.39 -0.09 12.68 14 12 O -0.59 -16.69 16.55 5.29 0.09 -16.61 14 13 C 0.01 0.17 6.94 -82.68 -0.57 -0.40 14 14 C 0.02 0.32 12.05 -16.82 -0.20 0.12 14 15 N -0.30 -4.84 12.28 30.91 0.38 -4.46 14 16 N -0.26 -3.90 7.76 60.35 0.47 -3.44 14 17 H 0.46 4.68 8.96 -339.97 -3.05 1.63 14 18 N -0.26 -4.98 8.75 33.42 0.29 -4.69 14 19 H 0.08 1.74 3.80 -108.77 -0.41 1.33 14 20 H 0.07 1.87 6.83 -51.93 -0.35 1.51 14 21 H 0.06 1.48 7.25 -51.93 -0.38 1.10 14 22 H 0.27 6.63 8.31 -40.82 -0.34 6.29 14 23 H 0.20 3.17 8.06 -52.49 -0.42 2.75 14 LS Contribution 209.35 15.07 3.15 3.15 Total: -1.00 -31.24 209.35 -5.21 -36.44 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -4.13 Total: 0.84 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -0.59 Total: 7.08 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: 1.29 Total: -46.32 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: 0.09 Total: -16.61 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 3.15 Total: 3.15 kcal Total: -31.24 -5.21 -36.44 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082367197.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.024 kcal (2) G-P(sol) polarization free energy of solvation -31.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds