Wall clock time and date at job start Sun Mar 29 2020 21:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99795 * 2 1 4 4 H 1.48496 * 109.47258 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.46990 * 120.00379 * 3 2 1 6 6 H 1.48497 * 109.46813 * 239.99520 * 3 2 1 7 7 C 1.38809 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99703 * 162.63273 * 7 2 1 9 9 N 1.36935 * 120.00336 * 342.63790 * 7 2 1 10 10 C 1.46827 * 119.75566 * 331.76686 * 9 7 2 11 11 C 1.53410 * 107.81476 * 232.43338 * 10 9 7 12 12 C 1.52784 * 108.61516 * 302.51704 * 11 10 9 13 13 C 1.52980 * 110.59893 * 63.38559 * 12 11 10 14 14 H 1.08998 * 111.96714 * 69.43002 * 13 12 11 15 15 C 1.55425 * 107.22978 * 192.91232 * 13 12 11 16 16 C 1.55461 * 103.96959 * 77.34907 * 15 13 12 17 17 C 1.54094 * 106.44103 * 23.95335 * 16 15 13 18 18 C 1.45409 * 119.76367 * 151.49330 * 9 7 2 19 19 H 1.09000 * 109.66478 * 11.35272 * 18 9 7 20 20 H 0.97005 * 120.00144 * 0.02562 * 1 2 3 21 21 H 1.08996 * 109.79142 * 352.01522 * 10 9 7 22 22 H 1.09006 * 109.79200 * 112.85417 * 10 9 7 23 23 H 1.08996 * 109.61109 * 62.25951 * 11 10 9 24 24 H 1.09003 * 109.61272 * 182.60612 * 11 10 9 25 25 H 1.08999 * 109.25331 * 183.67369 * 12 11 10 26 26 H 1.09003 * 109.25273 * 303.13581 * 12 11 10 27 27 H 1.09008 * 110.50664 * 196.08248 * 15 13 12 28 28 H 1.08998 * 110.51150 * 318.79182 * 15 13 12 29 29 H 1.08995 * 109.98380 * 264.77205 * 16 15 13 30 30 H 1.08999 * 110.18785 * 143.24386 * 16 15 13 31 31 H 1.09000 * 110.10711 * 240.94512 * 17 16 15 32 32 H 1.09001 * 110.10477 * 119.32328 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0534 -1.2235 -0.2787 9 7 1.3724 -2.3609 0.3549 10 6 0.2384 -2.3130 1.2863 11 6 0.5184 -3.3097 2.4184 12 6 0.7251 -4.6951 1.8084 13 6 1.9580 -4.7060 0.9028 14 1 2.8827 -4.6102 1.4719 15 6 1.9106 -6.0215 0.0764 16 6 0.8509 -5.7351 -1.0245 17 6 0.7982 -4.2042 -1.1914 18 6 1.8193 -3.6291 -0.1985 19 1 2.7763 -3.4928 -0.7020 20 1 -0.4850 0.8401 -0.0004 21 1 0.1393 -1.3077 1.6957 22 1 -0.6781 -2.5926 0.7667 23 1 1.4173 -3.0090 2.9566 24 1 -0.3285 -3.3317 3.1043 25 1 0.8601 -5.4234 2.6080 26 1 -0.1534 -4.9642 1.2218 27 1 2.8833 -6.2268 -0.3708 28 1 1.5937 -6.8551 0.7031 29 1 -0.1230 -6.1105 -0.7106 30 1 1.1476 -6.2033 -1.9630 31 1 -0.2006 -3.8359 -0.9572 32 1 1.0703 -3.9288 -2.2103 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083700989.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:25:41 Heat of formation + Delta-G solvation = 0.544630 kcal Electronic energy + Delta-G solvation = -13137.835660 eV Core-core repulsion = 11097.821359 eV Total energy + Delta-G solvation = -2040.014300 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.84756 -34.47980 -32.38660 -30.61391 -28.11333 -26.74832 -24.75100 -22.13324 -21.06298 -19.50032 -17.93756 -16.56489 -15.10907 -14.85192 -14.19105 -13.81727 -13.38184 -12.60100 -12.34897 -12.14650 -11.78717 -11.38180 -10.99347 -10.80047 -10.58237 -10.52460 -10.27551 -10.19934 -9.90439 -9.83457 -9.70206 -9.35638 -9.11692 -8.37997 -6.58087 -5.73623 -3.16184 3.41212 3.46704 3.48395 4.53853 5.19631 5.28500 5.34959 5.48242 5.73459 5.86088 5.87939 5.99866 6.16018 6.19476 6.30321 6.40318 6.45794 6.49784 6.59502 6.68072 6.75229 6.87346 6.89391 7.04561 7.10686 7.26368 7.49771 7.76460 7.85619 8.54044 9.29240 9.95422 10.47524 11.33974 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.052034 B = 0.012150 C = 0.011326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.985213 B = 2303.919603 C = 2471.691547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.004 3.996 3 Si 0.901 3.099 4 H -0.291 1.291 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.256 4.256 8 H 0.064 0.936 9 N -0.581 5.581 10 C 0.175 3.825 11 C -0.145 4.145 12 C -0.100 4.100 13 C -0.105 4.105 14 H 0.070 0.930 15 C -0.121 4.121 16 C -0.120 4.120 17 C -0.140 4.140 18 C 0.183 3.817 19 H 0.057 0.943 20 H 0.253 0.747 21 H 0.083 0.917 22 H 0.018 0.982 23 H 0.053 0.947 24 H 0.045 0.955 25 H 0.039 0.961 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.495 -8.729 1.555 8.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.195 4.195 3 Si 0.731 3.269 4 H -0.217 1.217 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.386 4.386 8 H 0.082 0.918 9 N -0.300 5.300 10 C 0.049 3.951 11 C -0.184 4.184 12 C -0.137 4.137 13 C -0.125 4.125 14 H 0.088 0.912 15 C -0.159 4.159 16 C -0.158 4.158 17 C -0.180 4.180 18 C 0.074 3.926 19 H 0.075 0.925 20 H 0.063 0.937 21 H 0.101 0.899 22 H 0.036 0.964 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.368 -8.549 1.549 8.796 hybrid contribution 0.321 0.841 -0.101 0.906 sum 1.690 -7.708 1.447 8.023 Atomic orbital electron populations 1.70044 1.05249 1.25515 1.53849 1.25027 0.95231 0.98347 1.00899 0.86397 0.78947 0.83483 0.78114 1.21688 1.21052 1.20933 1.19192 0.92723 0.85109 1.41552 0.91848 1.43703 1.36252 1.01407 1.48632 1.20787 0.88756 0.97774 0.87762 1.22153 1.00029 0.96708 0.99477 1.21351 0.97803 0.96953 0.97610 1.22519 0.97658 0.95294 0.97031 0.91153 1.22688 0.98526 0.97442 0.97214 1.22321 0.98318 0.97485 0.97725 1.22609 1.02126 0.93167 1.00142 1.20715 0.95470 0.85888 0.90567 0.92518 0.93658 0.89887 0.96388 0.92827 0.93602 0.94263 0.92649 0.92417 0.92667 0.92869 0.93038 0.91783 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.47 11.20 55.49 0.62 -25.85 16 2 C 0.00 0.10 4.87 -17.43 -0.08 0.01 16 3 Si 0.90 21.96 29.59 -169.99 -5.03 16.93 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.26 -7.14 9.49 -15.06 -0.14 -7.28 16 8 H 0.06 1.74 7.85 -52.48 -0.41 1.33 16 9 N -0.58 -14.79 2.73 -164.60 -0.45 -15.24 16 10 C 0.17 4.28 4.96 -3.65 -0.02 4.26 16 11 C -0.14 -2.91 6.10 -26.63 -0.16 -3.07 16 12 C -0.10 -1.79 4.82 -26.85 -0.13 -1.92 16 13 C -0.10 -1.91 3.60 -88.47 -0.32 -2.23 16 14 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 15 C -0.12 -1.85 6.27 -24.14 -0.15 -2.00 16 16 C -0.12 -1.92 6.18 -24.85 -0.15 -2.08 16 17 C -0.14 -2.80 6.02 -25.85 -0.16 -2.95 16 18 C 0.18 3.95 2.99 -67.34 -0.20 3.74 16 19 H 0.06 1.25 7.88 -51.93 -0.41 0.84 16 20 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 21 H 0.08 2.27 6.09 -51.93 -0.32 1.95 16 22 H 0.02 0.47 7.44 -51.93 -0.39 0.08 16 23 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 1.01 6.79 -51.93 -0.35 0.65 16 27 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 28 H 0.05 0.76 8.00 -51.93 -0.42 0.35 16 29 H 0.05 0.81 7.87 -51.93 -0.41 0.40 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 1.42 7.16 -51.93 -0.37 1.05 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 244.52 15.07 3.68 3.68 Total: -1.00 -28.75 244.52 -7.86 -36.61 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -5.17 Total: -2.64 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -1.52 Total: -13.51 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.17 Total: -41.08 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -28.75 -7.86 -36.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083700989.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.154 kcal (2) G-P(sol) polarization free energy of solvation -28.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds