Wall clock time and date at job start Sun Mar 29 2020 21:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00209 * 2 1 4 4 H 1.48496 * 109.47378 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46734 * 59.99822 * 3 2 1 6 6 H 1.48497 * 109.46949 * 300.00067 * 3 2 1 7 7 C 1.38812 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00099 * 205.15321 * 7 2 1 9 9 N 1.36934 * 120.00177 * 25.15354 * 7 2 1 10 10 C 1.47953 * 122.26963 * 26.73395 * 9 7 2 11 11 C 1.52702 * 110.98081 * 128.30516 * 10 9 7 12 12 C 1.53819 * 111.70259 * 48.40748 * 11 10 9 13 13 C 1.51553 * 107.20706 * 302.45118 * 12 11 10 14 14 H 1.08991 * 110.19716 * 306.31034 * 13 12 11 15 15 C 1.53017 * 116.88551 * 178.81775 * 13 12 11 16 16 C 1.54815 * 102.65940 * 201.60926 * 15 13 12 17 17 C 1.55051 * 106.29658 * 24.49537 * 16 15 13 18 18 C 1.45290 * 122.26979 * 206.44770 * 9 7 2 19 19 H 1.08997 * 109.69353 * 121.78209 * 18 9 7 20 20 H 0.97003 * 119.99927 * 184.04017 * 1 2 3 21 21 H 1.09004 * 109.17680 * 248.68584 * 10 9 7 22 22 H 1.08996 * 109.18013 * 7.96602 * 10 9 7 23 23 H 1.09001 * 109.04017 * 168.98100 * 11 10 9 24 24 H 1.08999 * 109.03650 * 287.90703 * 11 10 9 25 25 H 1.08996 * 109.90796 * 61.87346 * 12 11 10 26 26 H 1.08995 * 109.91256 * 183.02818 * 12 11 10 27 27 H 1.08996 * 110.75975 * 320.49731 * 15 13 12 28 28 H 1.08999 * 110.75297 * 83.87041 * 15 13 12 29 29 H 1.09004 * 110.47817 * 265.08294 * 16 15 13 30 30 H 1.09003 * 109.76251 * 143.52654 * 16 15 13 31 31 H 1.08993 * 110.30538 * 244.57995 * 17 16 15 32 32 H 1.09008 * 110.38060 * 122.47958 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 1.2125 6 1 1.8914 2.3964 -1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0134 -1.2467 0.3970 9 7 1.4230 -2.3316 -0.5051 10 6 0.3696 -2.2781 -1.5427 11 6 0.7125 -3.1915 -2.7174 12 6 1.1332 -4.5933 -2.2441 13 6 2.3165 -4.4160 -1.3140 14 1 3.0970 -3.8346 -1.8046 15 6 2.9000 -5.6841 -0.6872 16 6 3.6401 -5.1375 0.5579 17 6 2.9513 -3.7963 0.9196 18 6 1.7963 -3.6640 -0.0622 19 1 0.9209 -4.1780 0.3346 20 1 -0.4850 -0.8380 0.0592 21 1 -0.5781 -2.5952 -1.1075 22 1 0.2733 -1.2539 -1.9027 23 1 -0.1603 -3.2818 -3.3642 24 1 1.5308 -2.7486 -3.2851 25 1 0.3096 -5.0676 -1.7106 26 1 1.4222 -5.2029 -3.1002 27 1 2.1064 -6.3755 -0.4040 28 1 3.6055 -6.1616 -1.3672 29 1 4.6931 -4.9685 0.3320 30 1 3.5432 -5.8427 1.3834 31 1 3.6487 -2.9678 0.7970 32 1 2.5764 -3.8259 1.9428 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083700990.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:25:43 Heat of formation + Delta-G solvation = 0.392122 kcal Electronic energy + Delta-G solvation = -13112.417528 eV Core-core repulsion = 11072.396615 eV Total energy + Delta-G solvation = -2040.020913 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.00557 -34.81541 -32.99448 -30.43654 -28.03631 -26.78951 -24.90812 -21.98807 -20.53840 -19.66787 -19.16006 -16.80105 -15.20757 -14.56112 -14.02712 -13.66952 -13.48575 -13.22261 -12.90748 -12.43193 -11.75436 -11.63209 -10.85275 -10.76182 -10.62955 -10.38279 -10.18288 -10.06525 -10.02660 -9.95254 -9.74427 -9.63553 -9.06616 -8.26489 -6.76143 -6.01445 -3.13999 3.53219 3.56460 3.69580 4.62560 4.98981 5.22529 5.27963 5.38876 5.56392 5.70846 5.82050 5.92309 6.05012 6.09999 6.11242 6.24123 6.30117 6.41558 6.45335 6.51684 6.60289 6.64639 6.83834 6.90845 6.97974 7.06248 7.19000 7.30354 8.06740 8.63129 9.18895 9.92116 10.44002 11.28483 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.041712 B = 0.013557 C = 0.011269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.100665 B = 2064.783970 C = 2484.102702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.027 4.027 3 Si 1.069 2.931 4 H -0.293 1.293 5 H -0.295 1.295 6 H -0.291 1.291 7 C -0.341 4.341 8 H 0.060 0.940 9 N -0.589 5.589 10 C 0.149 3.851 11 C -0.135 4.135 12 C -0.098 4.098 13 C -0.122 4.122 14 H 0.071 0.929 15 C -0.114 4.114 16 C -0.119 4.119 17 C -0.115 4.115 18 C 0.174 3.826 19 H 0.021 0.979 20 H 0.269 0.731 21 H 0.014 0.986 22 H 0.075 0.925 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.046 0.954 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.171 -8.664 -2.354 9.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.228 4.228 3 Si 0.899 3.101 4 H -0.219 1.219 5 H -0.222 1.222 6 H -0.218 1.218 7 C -0.470 4.470 8 H 0.077 0.923 9 N -0.313 5.313 10 C 0.024 3.976 11 C -0.174 4.174 12 C -0.135 4.135 13 C -0.143 4.143 14 H 0.090 0.910 15 C -0.152 4.152 16 C -0.157 4.157 17 C -0.153 4.153 18 C 0.067 3.933 19 H 0.039 0.961 20 H 0.080 0.920 21 H 0.032 0.968 22 H 0.094 0.906 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.021 -6.940 -2.368 8.363 hybrid contribution 0.154 -1.685 0.056 1.693 sum 4.175 -8.625 -2.312 9.857 Atomic orbital electron populations 1.70713 1.06621 1.30269 1.48468 1.25805 0.96549 1.01382 0.99102 0.83473 0.74365 0.75637 0.76613 1.21879 1.22188 1.21771 1.19910 0.97784 0.88164 1.41173 0.92251 1.43864 1.45363 1.00801 1.41222 1.20943 0.90229 0.98730 0.87739 1.22050 1.00089 0.95930 0.99328 1.21231 0.97425 0.96774 0.98084 1.22224 0.97304 0.96249 0.98513 0.91010 1.21986 0.98965 0.97340 0.96887 1.22399 0.99052 0.96989 0.97308 1.21881 0.98295 0.96579 0.98545 1.20599 0.94152 0.87151 0.91446 0.96137 0.91984 0.96768 0.90623 0.93181 0.92779 0.92827 0.93543 0.92119 0.92719 0.92359 0.92724 0.90805 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.05 12.50 55.49 0.69 -27.36 16 2 C -0.03 -0.77 4.76 -17.43 -0.08 -0.85 16 3 Si 1.07 25.77 29.99 -169.99 -5.10 20.68 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.34 -9.62 9.17 -15.06 -0.14 -9.76 16 8 H 0.06 1.68 6.39 -52.48 -0.34 1.34 16 9 N -0.59 -15.12 2.81 -164.82 -0.46 -15.58 16 10 C 0.15 3.59 4.70 -3.40 -0.02 3.58 16 11 C -0.13 -2.64 5.94 -26.46 -0.16 -2.80 16 12 C -0.10 -1.72 5.71 -27.04 -0.15 -1.87 16 13 C -0.12 -2.28 2.43 -90.28 -0.22 -2.50 16 14 H 0.07 1.47 8.12 -51.93 -0.42 1.04 16 15 C -0.11 -1.76 6.47 -25.77 -0.17 -1.92 16 16 C -0.12 -1.87 6.85 -24.69 -0.17 -2.04 16 17 C -0.12 -2.26 6.13 -26.07 -0.16 -2.42 16 18 C 0.17 3.80 2.86 -67.94 -0.19 3.61 16 19 H 0.02 0.47 8.00 -51.93 -0.42 0.06 16 20 H 0.27 8.28 6.59 -40.82 -0.27 8.01 16 21 H 0.01 0.35 7.82 -51.93 -0.41 -0.05 16 22 H 0.08 2.03 6.47 -51.93 -0.34 1.69 16 23 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 25 H 0.05 0.93 8.00 -51.93 -0.42 0.51 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.57 6.41 -51.93 -0.33 1.24 16 32 H 0.05 1.07 8.14 -51.92 -0.42 0.65 16 LS Contribution 244.57 15.07 3.69 3.69 Total: -1.00 -29.89 244.57 -7.75 -37.63 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -5.11 Total: -2.08 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -1.46 Total: -16.97 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.23 Total: -42.94 kcal Atomic # 14 Polarization: 25.77 SS G_CDS: -5.10 Total: 20.68 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -29.89 -7.75 -37.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083700990.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.027 kcal (2) G-P(sol) polarization free energy of solvation -29.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds