Wall clock time and date at job start Sun Mar 29 2020 21:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00395 * 2 1 4 4 H 1.48498 * 109.47175 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47100 * 120.00089 * 3 2 1 6 6 H 1.48504 * 109.47263 * 240.00145 * 3 2 1 7 7 C 1.37881 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00235 * 177.73977 * 7 2 1 9 9 C 1.50699 * 119.99996 * 357.73441 * 7 2 1 10 10 C 1.52998 * 115.55033 * 84.85495 * 9 7 2 11 11 N 1.46904 * 109.47195 * 54.65282 * 10 9 7 12 12 C 1.48536 * 110.99465 * 58.49434 * 11 10 9 13 13 C 1.54941 * 103.22475 * 159.72122 * 12 11 10 14 14 C 1.54594 * 102.91981 * 322.58348 * 13 12 11 15 15 C 1.47900 * 111.00082 * 175.88874 * 11 10 9 16 16 C 1.53001 * 117.49812 * 299.18446 * 9 7 2 17 17 C 1.53000 * 117.50089 * 230.52532 * 9 7 2 18 18 H 0.96996 * 120.00197 * 176.05635 * 1 2 3 19 19 H 1.08997 * 109.47200 * 174.65291 * 10 9 7 20 20 H 1.09000 * 109.47260 * 294.65354 * 10 9 7 21 21 H 1.09002 * 110.66970 * 278.15516 * 12 11 10 22 22 H 1.09003 * 110.67156 * 41.28647 * 12 11 10 23 23 H 1.09005 * 110.72102 * 204.22369 * 13 12 11 24 24 H 1.09001 * 110.72525 * 80.94255 * 13 12 11 25 25 H 1.08995 * 110.30944 * 263.04192 * 14 13 12 26 26 H 1.09001 * 110.30733 * 140.87447 * 14 13 12 27 27 H 1.09001 * 109.91653 * 333.51121 * 15 11 10 28 28 H 1.08990 * 109.91639 * 94.80813 * 15 11 10 29 29 H 1.08999 * 117.50008 * 359.97438 * 16 9 7 30 30 H 1.09003 * 117.49467 * 145.02261 * 16 9 7 31 31 H 1.08994 * 117.50018 * 214.98135 * 17 9 7 32 32 H 1.09000 * 117.49752 * 0.02562 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 1.2844 2.7464 -0.0006 5 1 3.1030 1.6962 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0839 -1.1946 -0.0374 9 6 1.2518 -2.4987 0.0505 10 6 0.7680 -3.0346 -1.2984 11 7 1.9061 -3.1362 -2.2217 12 6 2.9596 -4.0274 -1.6718 13 6 3.7745 -4.4293 -2.9268 14 6 2.6850 -4.5778 -4.0134 15 6 1.4943 -3.7434 -3.5059 16 6 0.3667 -2.7563 1.2716 17 6 1.6817 -3.5216 1.1039 18 1 -0.4850 -0.8380 -0.0578 19 1 0.3236 -4.0201 -1.1596 20 1 0.0232 -2.3554 -1.7133 21 1 3.5872 -3.4887 -0.9618 22 1 2.5149 -4.9059 -1.2042 23 1 4.2897 -5.3762 -2.7651 24 1 4.4822 -3.6448 -3.1947 25 1 2.3963 -5.6235 -4.1194 26 1 3.0437 -4.1853 -4.9649 27 1 0.6286 -4.3875 -3.3514 28 1 1.2549 -2.9615 -4.2264 29 1 0.3291 -1.9824 2.0382 30 1 -0.5601 -3.3079 1.1139 31 1 1.6195 -4.5763 0.8361 32 1 2.5086 -3.2508 1.7603 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083862237.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:48 Heat of formation + Delta-G solvation = 20.479524 kcal Electronic energy + Delta-G solvation = -12848.309725 eV Core-core repulsion = 10809.159867 eV Total energy + Delta-G solvation = -2039.149858 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.56179 -36.25029 -31.73819 -31.08457 -28.36173 -25.42847 -24.45270 -21.36084 -20.60533 -20.27217 -19.15804 -16.50684 -15.47393 -15.06542 -13.94106 -13.63087 -13.50173 -13.25371 -12.70345 -12.10458 -11.84560 -11.64444 -11.01971 -10.82997 -10.75994 -10.62984 -10.50573 -10.37384 -10.20201 -10.01073 -9.37129 -8.41192 -8.36032 -8.15439 -7.52809 -6.18278 -3.88691 3.51934 3.55286 3.72439 4.60846 4.68746 5.06614 5.12920 5.22010 5.35616 5.50502 5.71718 5.85714 5.99449 6.03776 6.10117 6.15277 6.21046 6.30871 6.37385 6.47776 6.55357 6.57443 6.62366 6.79993 6.93736 7.31771 7.34071 7.70376 7.94169 8.43487 8.58023 9.03764 9.83022 11.21112 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.035440 B = 0.012859 C = 0.011216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.882215 B = 2176.912360 C = 2495.812359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.024 3.976 3 Si 1.066 2.934 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.288 1.288 7 C -0.543 4.543 8 H 0.050 0.950 9 C 0.030 3.970 10 C 0.091 3.909 11 N -0.488 5.488 12 C 0.047 3.953 13 C -0.126 4.126 14 C -0.128 4.128 15 C 0.031 3.969 16 C -0.181 4.181 17 C -0.200 4.200 18 H 0.272 0.728 19 H 0.001 0.999 20 H 0.068 0.932 21 H 0.086 0.914 22 H 0.030 0.970 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.032 0.968 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.962 -7.752 -4.500 9.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.180 4.180 3 Si 0.895 3.105 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.581 4.581 8 H 0.068 0.932 9 C 0.029 3.971 10 C -0.037 4.037 11 N -0.211 5.211 12 C -0.081 4.081 13 C -0.164 4.164 14 C -0.166 4.166 15 C -0.097 4.097 16 C -0.219 4.219 17 C -0.237 4.237 18 H 0.083 0.917 19 H 0.019 0.981 20 H 0.086 0.914 21 H 0.104 0.896 22 H 0.049 0.951 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.938 -5.552 -4.529 8.176 hybrid contribution -0.271 -2.602 0.094 2.618 sum 3.666 -8.154 -4.435 9.980 Atomic orbital electron populations 1.70731 1.06798 1.30997 1.46469 1.25665 0.96568 1.02060 0.93695 0.83594 0.74894 0.75647 0.76367 1.21088 1.21783 1.21463 1.21081 0.93286 0.89235 1.54462 0.93161 1.19098 0.97781 0.95053 0.85135 1.21899 0.91609 0.96000 0.94203 1.64654 1.10028 1.44357 1.02098 1.23117 0.94264 0.94497 0.96219 1.22515 0.97658 1.00678 0.95549 1.22368 0.96109 0.99162 0.99002 1.22886 0.96058 0.96676 0.94099 1.22778 0.92208 1.02467 1.04458 1.22927 0.98574 0.95301 1.06900 0.91739 0.98058 0.91364 0.89601 0.95126 0.91969 0.90969 0.92326 0.91568 0.94974 0.90979 0.89693 0.91905 0.92014 0.90286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.43 13.49 55.43 0.75 -26.68 16 2 C 0.02 0.69 5.41 -17.82 -0.10 0.60 16 3 Si 1.07 25.69 29.90 -169.99 -5.08 20.61 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.54 -15.15 8.52 -34.44 -0.29 -15.44 16 8 H 0.05 1.43 7.81 -52.49 -0.41 1.02 16 9 C 0.03 0.75 0.44 -155.66 -0.07 0.68 16 10 C 0.09 2.09 4.70 -3.82 -0.02 2.08 16 11 N -0.49 -10.31 5.04 -230.45 -1.16 -11.47 16 12 C 0.05 0.88 5.06 -1.89 -0.01 0.87 16 13 C -0.13 -1.89 7.06 -24.87 -0.18 -2.07 16 14 C -0.13 -1.83 6.93 -25.38 -0.18 -2.00 16 15 C 0.03 0.54 6.70 -2.76 -0.02 0.52 16 16 C -0.18 -4.28 8.63 -26.69 -0.23 -4.51 16 17 C -0.20 -4.41 8.79 -26.69 -0.23 -4.65 16 18 H 0.27 8.08 6.18 -40.82 -0.25 7.83 16 19 H 0.00 0.03 7.92 -51.93 -0.41 -0.38 16 20 H 0.07 1.71 7.81 -51.93 -0.41 1.30 16 21 H 0.09 1.76 7.79 -51.93 -0.40 1.36 16 22 H 0.03 0.56 7.43 -51.93 -0.39 0.17 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.03 0.54 7.67 -51.93 -0.40 0.14 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.08 2.16 8.14 -51.93 -0.42 1.73 16 30 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.06 1.24 7.64 -51.93 -0.40 0.84 16 32 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 LS Contribution 257.39 15.07 3.88 3.88 Total: -1.00 -29.69 257.39 -8.18 -37.87 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -5.24 Total: -0.27 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: -1.32 Total: -23.94 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: -0.41 Total: -38.15 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -5.08 Total: 20.61 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.69 -8.18 -37.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862237.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.354 kcal (2) G-P(sol) polarization free energy of solvation -29.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds