Wall clock time and date at job start Sun Mar 29 2020 21:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86790 * 120.00560 * 2 1 4 4 H 1.48504 * 109.47424 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47268 * 300.00787 * 3 2 1 6 6 H 1.48510 * 109.46911 * 60.00668 * 3 2 1 7 7 C 1.40142 * 119.99373 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99679 * 179.97438 * 7 2 1 9 9 C 1.41280 * 120.00332 * 359.97438 * 7 2 1 10 10 O 1.21880 * 119.99997 * 359.97438 * 9 7 2 11 11 N 1.34776 * 120.00360 * 180.02562 * 9 7 2 12 12 C 1.39502 * 120.00346 * 185.32952 * 11 9 7 13 13 C 1.38808 * 122.75127 * 205.16834 * 12 11 9 14 14 C 1.33312 * 114.98773 * 179.97438 * 13 12 11 15 15 S 1.75818 * 109.91019 * 359.72931 * 14 13 12 16 16 C 1.34957 * 122.75018 * 25.13466 * 12 11 9 17 17 H 0.97000 * 119.99142 * 359.97438 * 1 2 3 18 18 H 0.97003 * 119.99816 * 5.32480 * 11 9 7 19 19 H 1.07997 * 122.50241 * 359.97438 * 13 12 11 20 20 H 1.08000 * 125.04093 * 180.02562 * 14 13 12 21 21 H 1.07997 * 125.25381 * 0.02922 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6176 0.0000 4 1 3.7005 1.3461 -0.0006 5 1 1.8816 2.3964 -1.2124 6 1 1.8818 2.3962 1.2127 7 6 2.0069 -1.2137 -0.0005 8 1 3.0869 -1.2138 -0.0010 9 6 1.3004 -2.4372 -0.0005 10 8 0.0817 -2.4372 0.0004 11 7 1.9742 -3.6045 -0.0005 12 6 1.2811 -4.8100 -0.1128 13 6 1.7811 -6.0114 0.3702 14 6 0.9900 -7.0675 0.1807 15 16 -0.4829 -6.5723 -0.6418 16 6 0.0693 -4.9035 -0.6992 17 1 -0.4849 0.8401 0.0004 18 1 2.9411 -3.6064 0.0774 19 1 2.7394 -6.0850 0.8628 20 1 1.2178 -8.0766 0.4909 21 1 -0.4787 -4.0800 -1.1327 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085535343.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:59 Heat of formation + Delta-G solvation = -4.431295 kcal Electronic energy + Delta-G solvation = -10048.845522 eV Core-core repulsion = 8016.557559 eV Total energy + Delta-G solvation = -2032.287964 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 197.025 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.66102 -36.09027 -32.86906 -31.97114 -28.33438 -26.46417 -23.35128 -20.34755 -18.42590 -17.81059 -16.61490 -15.53773 -14.96063 -14.07989 -13.40433 -13.15013 -12.58524 -12.12338 -11.86170 -11.61437 -11.30736 -11.10652 -10.62056 -10.36816 -10.29671 -9.25671 -8.82306 -8.11650 -7.66222 -6.81965 -6.36324 -4.89343 1.70187 2.32682 2.70237 3.03486 3.12989 3.17621 3.45553 3.99583 4.46456 4.86302 5.53340 5.76480 5.82097 6.35791 6.43816 6.92784 7.06270 7.24742 7.91265 8.05765 8.23225 8.81166 9.35523 10.39961 10.62018 Molecular weight = 197.03amu Principal moments of inertia in cm(-1) A = 0.095774 B = 0.008934 C = 0.008281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 292.284603 B = 3133.277859 C = 3380.491835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.747 5.747 2 C 0.087 3.913 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.070 0.930 9 C 0.544 3.456 10 O -0.566 6.566 11 N -0.687 5.687 12 C 0.148 3.852 13 C -0.148 4.148 14 C -0.216 4.216 15 S 0.053 5.947 16 C -0.234 4.234 17 H 0.272 0.728 18 H 0.390 0.610 19 H 0.134 0.866 20 H 0.157 0.843 21 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.662 -7.477 -0.379 8.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.135 4.135 3 Si 0.737 3.263 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.574 4.574 8 H 0.088 0.912 9 C 0.353 3.647 10 O -0.450 6.450 11 N -0.332 5.332 12 C 0.040 3.960 13 C -0.183 4.183 14 C -0.351 4.351 15 S 0.311 5.689 16 C -0.374 4.374 17 H 0.083 0.917 18 H 0.223 0.777 19 H 0.152 0.848 20 H 0.174 0.826 21 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 1.357 -7.998 -0.867 8.159 hybrid contribution 2.229 1.501 0.638 2.762 sum 3.586 -6.497 -0.229 7.425 Atomic orbital electron populations 1.70030 1.07295 1.27725 1.32425 1.25773 0.94651 1.00715 0.92404 0.86226 0.80532 0.81118 0.78420 1.18563 1.19925 1.19939 1.19968 0.94406 0.90055 1.52923 0.91160 1.16952 0.87631 0.82117 0.78022 1.90643 1.13610 1.85692 1.55063 1.43854 1.09166 1.03636 1.76496 1.16947 0.94055 0.87380 0.97596 1.19956 1.02024 0.91919 1.04371 1.25125 0.98663 1.02191 1.09138 1.83820 1.21074 1.04119 1.59886 1.25809 1.02210 0.97618 1.11757 0.91723 0.77692 0.84812 0.82580 0.80399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -21.70 11.72 55.56 0.65 -21.05 14 2 C 0.09 2.37 5.50 -17.35 -0.10 2.27 14 3 Si 0.91 19.43 29.56 -169.99 -5.02 14.40 14 4 H -0.26 -5.37 7.11 56.52 0.40 -4.97 14 5 H -0.27 -5.72 7.11 56.52 0.40 -5.32 14 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 14 7 C -0.54 -14.81 9.29 -37.71 -0.35 -15.16 14 8 H 0.07 1.76 7.85 -52.49 -0.41 1.34 14 9 C 0.54 15.39 7.41 -15.10 -0.11 15.28 14 10 O -0.57 -17.96 12.39 5.03 0.06 -17.89 14 11 N -0.69 -15.98 5.38 -13.56 -0.07 -16.06 14 12 C 0.15 3.21 6.39 -85.32 -0.55 2.66 14 13 C -0.15 -2.59 10.15 -41.09 -0.42 -3.01 14 14 C -0.22 -3.38 11.20 29.01 0.32 -3.06 14 15 S 0.05 0.91 23.33 -107.50 -2.51 -1.60 14 16 C -0.23 -5.22 9.83 29.57 0.29 -4.93 14 17 H 0.27 7.09 8.29 -40.82 -0.34 6.75 14 18 H 0.39 7.73 8.78 -40.82 -0.36 7.37 14 19 H 0.13 1.96 8.06 -52.49 -0.42 1.54 14 20 H 0.16 1.89 8.06 -52.49 -0.42 1.46 14 21 H 0.18 4.55 6.38 -52.49 -0.34 4.21 14 LS Contribution 210.88 15.07 3.18 3.18 Total: -1.00 -32.19 210.88 -5.70 -37.90 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -1.08 Total: 7.07 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -0.90 Total: -5.95 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.58 Total: -37.11 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: 0.06 Total: -17.89 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.40 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.51 Total: -1.60 kcal Total LS contribution 3.18 Total: 3.18 kcal Total: -32.19 -5.70 -37.90 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085535343.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.465 kcal (2) G-P(sol) polarization free energy of solvation -32.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds