Wall clock time and date at job start Sun Mar 29 2020 21:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.46873 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46897 * 111.00172 * 84.99810 * 12 2 1 14 14 C 1.50697 * 109.46908 * 180.02562 * 13 12 2 15 15 C 1.41376 * 126.80401 * 95.00042 * 14 13 12 16 16 C 1.35452 * 103.98678 * 179.97438 * 15 14 13 17 17 O 1.34040 * 106.44636 * 359.97438 * 16 15 14 18 18 N 1.20923 * 111.56772 * 359.70801 * 17 16 15 19 19 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 20 20 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 22 22 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 23 23 H 1.00899 * 110.99467 * 321.04346 * 12 2 1 24 24 H 1.09005 * 109.47066 * 299.99968 * 13 12 2 25 25 H 1.09001 * 109.47085 * 59.99954 * 13 12 2 26 26 H 1.08002 * 128.01091 * 0.03234 * 15 14 13 27 27 H 1.08005 * 126.77973 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8271 -0.4200 5.2204 11 1 1.8261 -2.5204 4.0076 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 2.5874 -0.5216 -3.5560 15 6 1.8046 -1.1295 -4.5642 16 6 2.7179 -1.6578 -5.4138 17 8 3.9231 -1.3605 -4.9082 18 7 3.8308 -0.7261 -3.8828 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 0.7096 1.1617 3.4844 23 1 1.4496 -1.4978 -1.4101 24 1 1.0870 0.6164 -2.5525 25 1 2.7588 1.0463 -2.1182 26 1 0.7278 -1.1640 -4.6401 27 1 2.5150 -2.2096 -6.3198 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086443280.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:16 Heat of formation + Delta-G solvation = 60.831705 kcal Electronic energy + Delta-G solvation = -11988.670657 eV Core-core repulsion = 9750.011595 eV Total energy + Delta-G solvation = -2238.659062 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.69209 -36.40789 -33.99772 -32.17610 -31.39477 -28.76674 -25.32159 -24.80329 -22.85395 -20.77730 -20.23408 -17.62361 -17.29427 -16.29566 -15.06775 -14.72541 -14.07898 -13.48715 -13.44002 -12.93490 -12.24578 -11.78788 -11.58400 -11.09322 -10.89438 -10.78155 -10.51786 -10.16233 -10.09320 -9.74984 -9.43106 -9.04296 -8.35804 -7.30664 -5.98379 -4.01568 1.70698 2.48565 3.36141 3.39487 3.43722 3.46224 4.43733 4.50567 4.77183 5.31350 5.33283 5.45636 5.51679 5.73705 6.00728 6.13349 6.29933 6.65162 6.80452 7.04427 7.30194 7.71186 7.86803 8.23556 8.47694 8.55017 8.58351 9.05034 9.63600 11.08779 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.066301 B = 0.007570 C = 0.007109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.212933 B = 3697.913875 C = 3937.695611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.211 3.789 3 H 0.036 0.964 4 C -0.496 4.496 5 H 0.062 0.938 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.676 5.676 13 C 0.133 3.867 14 C 0.031 3.969 15 C -0.232 4.232 16 C -0.073 4.073 17 O 0.095 5.905 18 N -0.351 5.351 19 H 0.091 0.909 20 H 0.029 0.971 21 H 0.005 0.995 22 H 0.260 0.740 23 H 0.327 0.673 24 H 0.043 0.957 25 H 0.082 0.918 26 H 0.168 0.832 27 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.665 -3.197 -13.188 13.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.104 3.896 3 H 0.054 0.946 4 C -0.534 4.534 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.307 5.307 13 C 0.002 3.998 14 C -0.129 4.129 15 C -0.254 4.254 16 C -0.155 4.155 17 O 0.028 5.972 18 N -0.054 5.054 19 H 0.109 0.891 20 H 0.048 0.952 21 H 0.024 0.976 22 H 0.070 0.930 23 H 0.143 0.857 24 H 0.061 0.939 25 H 0.100 0.900 26 H 0.185 0.815 27 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 1.109 -2.639 -12.311 12.639 hybrid contribution -1.702 -0.506 0.370 1.814 sum -0.593 -3.145 -11.940 12.362 Atomic orbital electron populations 1.22446 1.00513 0.99311 1.00617 1.19217 0.89706 0.94541 0.86119 0.94633 1.21098 1.30312 1.12529 0.89501 0.91967 1.24942 0.95296 0.95209 0.99036 1.69867 1.37287 1.23151 1.23503 0.86538 0.79246 0.79565 0.81898 1.20243 1.21437 1.20355 1.60823 1.58435 1.08810 1.02657 1.20234 0.98604 0.94655 0.86259 1.23848 0.88542 1.01382 0.99126 1.22786 1.02021 1.04413 0.96158 1.25925 0.84258 1.03506 1.01795 1.84857 1.30729 1.52663 1.28971 1.73884 1.21418 1.11107 0.99028 0.89072 0.95235 0.97563 0.92978 0.85653 0.93908 0.89957 0.81493 0.77163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.04 8.94 37.16 0.33 -3.71 15 2 C 0.21 5.38 2.57 -68.86 -0.18 5.21 15 3 H 0.04 0.99 7.80 -51.93 -0.40 0.58 15 4 C -0.50 -13.99 8.84 -34.44 -0.30 -14.29 15 5 H 0.06 1.78 7.81 -52.49 -0.41 1.37 15 6 C 0.06 1.56 5.30 -17.82 -0.09 1.47 15 7 N -0.90 -25.83 11.32 55.43 0.63 -25.20 15 8 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 15 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 15 12 N -0.68 -14.95 6.22 -109.22 -0.68 -15.63 15 13 C 0.13 2.50 6.07 -4.98 -0.03 2.47 15 14 C 0.03 0.52 6.84 -82.10 -0.56 -0.04 15 15 C -0.23 -3.00 11.12 -39.38 -0.44 -3.44 15 16 C -0.07 -0.80 12.30 29.74 0.37 -0.43 15 17 O 0.09 1.38 11.20 17.18 0.19 1.57 15 18 N -0.35 -6.28 12.07 33.42 0.40 -5.88 15 19 H 0.09 2.41 6.07 -51.93 -0.32 2.09 15 20 H 0.03 0.67 8.13 -51.93 -0.42 0.25 15 21 H 0.01 0.12 7.45 -51.93 -0.39 -0.27 15 22 H 0.26 7.16 8.31 -40.82 -0.34 6.82 15 23 H 0.33 6.83 8.46 -39.29 -0.33 6.49 15 24 H 0.04 0.75 7.44 -51.93 -0.39 0.36 15 25 H 0.08 1.63 8.06 -51.93 -0.42 1.21 15 26 H 0.17 1.73 8.06 -52.49 -0.42 1.31 15 27 H 0.21 1.19 8.06 -52.48 -0.42 0.77 15 LS Contribution 239.30 15.07 3.61 3.61 Total: -1.00 -30.73 239.30 -4.84 -35.56 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -3.06 Total: 1.93 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -0.91 Total: -12.76 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.35 Total: -46.70 kcal Atomic # 8 Polarization: 1.38 SS G_CDS: 0.19 Total: 1.57 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -30.73 -4.84 -35.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086443280.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.394 kcal (2) G-P(sol) polarization free energy of solvation -30.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds