Wall clock time and date at job start Sun Mar 29 2020 22:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 110.91978 * 2 1 4 4 C 1.55159 * 111.00175 * 123.90519 * 2 1 3 5 5 C 1.54320 * 102.94349 * 82.57022 * 4 2 1 6 6 N 1.47018 * 107.27210 * 22.19183 * 5 4 2 7 7 C 1.34784 * 125.64722 * 181.02498 * 6 5 4 8 8 O 1.21691 * 119.99730 * 180.02562 * 7 6 5 9 9 C 1.46373 * 119.99945 * 0.02562 * 7 6 5 10 10 H 1.07996 * 119.99859 * 0.02562 * 9 7 6 11 11 C 1.40045 * 119.99887 * 180.02562 * 9 7 6 12 12 N 1.30678 * 119.99861 * 359.97438 * 11 9 7 13 13 Si 1.86802 * 120.00061 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.47312 * 90.00096 * 13 11 9 15 15 H 1.48507 * 109.46759 * 210.00091 * 13 11 9 16 16 H 1.48500 * 109.46937 * 329.99570 * 13 11 9 17 17 C 1.47421 * 108.70379 * 1.28563 * 6 5 4 18 18 H 1.09006 * 109.47338 * 296.10020 * 1 2 3 19 19 H 1.09007 * 109.47338 * 56.09637 * 1 2 3 20 20 H 1.08992 * 109.47872 * 176.09724 * 1 2 3 21 21 H 1.08998 * 109.46704 * 183.90350 * 3 2 1 22 22 H 1.08991 * 109.46921 * 303.90029 * 3 2 1 23 23 H 1.08994 * 109.46913 * 63.90176 * 3 2 1 24 24 H 1.08996 * 110.71852 * 324.20523 * 4 2 1 25 25 H 1.08998 * 110.86977 * 201.00393 * 4 2 1 26 26 H 1.09010 * 109.88205 * 262.77471 * 5 4 2 27 27 H 1.09004 * 110.01290 * 141.68524 * 5 4 2 28 28 H 0.97001 * 119.99621 * 179.97438 * 12 11 9 29 29 H 1.09005 * 110.36058 * 94.48410 * 17 6 5 30 30 H 1.08997 * 110.36930 * 216.80538 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0763 1.4292 0.0000 4 6 2.0860 -0.8080 1.2022 5 6 2.0284 -2.2647 0.6960 6 7 2.0137 -2.2159 -0.7733 7 6 1.9469 -3.2830 -1.5940 8 8 1.9417 -3.1233 -2.8004 9 6 1.8804 -4.6338 -1.0343 10 1 1.8845 -4.7754 0.0364 11 6 1.8115 -5.7425 -1.8871 12 7 1.8060 -5.5710 -3.1825 13 14 1.7259 -7.4664 -1.1727 14 1 0.3054 -7.8478 -0.9686 15 1 2.3654 -8.4234 -2.1112 16 1 2.4392 -7.4986 0.1294 17 6 2.0907 -0.8070 -1.2004 18 1 -0.3634 0.4521 0.9229 19 1 -0.3634 0.5733 -0.8530 20 1 -0.3634 -1.0252 -0.0699 21 1 3.1637 1.4024 -0.0700 22 1 1.6706 1.9731 -0.8529 23 1 1.7837 1.9299 0.9228 24 1 1.4523 -0.6793 2.0796 25 1 3.1128 -0.5172 1.4239 26 1 1.1216 -2.7480 1.0599 27 1 2.9047 -2.8141 1.0400 28 1 1.7586 -6.3390 -3.7732 29 1 3.1252 -0.5268 -1.3988 30 1 1.4763 -0.6449 -2.0860 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087254170.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:09 Heat of formation + Delta-G solvation = -50.578508 kcal Electronic energy + Delta-G solvation = -12863.086595 eV Core-core repulsion = 10657.710856 eV Total energy + Delta-G solvation = -2205.375739 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.89802 -36.09352 -32.63710 -32.27944 -28.85109 -27.07378 -27.01766 -24.80165 -22.04950 -19.24624 -18.63918 -16.44700 -15.46134 -15.13943 -14.27742 -13.87592 -13.75064 -13.28965 -12.62982 -12.50372 -11.90091 -11.82669 -11.63088 -11.29274 -11.15475 -11.04557 -10.76989 -10.52948 -10.26483 -10.20351 -10.14048 -9.99596 -8.83268 -7.60161 -7.10543 -6.17276 -4.61575 3.15105 3.21618 3.25355 4.10996 4.58043 4.67385 4.85961 5.13609 5.15691 5.62465 5.71645 5.77072 5.81639 5.88096 5.99921 6.03162 6.15126 6.28424 6.40433 6.44769 6.48173 6.63085 6.74994 6.77267 7.44883 7.47888 8.14842 8.46820 9.04375 9.55509 10.60909 10.80182 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.061801 B = 0.009708 C = 0.008993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.958133 B = 2883.568286 C = 3112.660300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.084 4.084 3 C -0.132 4.132 4 C -0.124 4.124 5 C 0.122 3.878 6 N -0.644 5.644 7 C 0.571 3.429 8 O -0.578 6.578 9 C -0.538 4.538 10 H 0.069 0.931 11 C 0.086 3.914 12 N -0.769 5.769 13 Si 0.908 3.092 14 H -0.272 1.272 15 H -0.279 1.279 16 H -0.265 1.265 17 C 0.125 3.875 18 H 0.050 0.950 19 H 0.052 0.948 20 H 0.062 0.938 21 H 0.055 0.945 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.268 0.732 29 H 0.043 0.957 30 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.649 7.920 8.650 11.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.085 4.085 3 C -0.189 4.189 4 C -0.162 4.162 5 C -0.003 4.003 6 N -0.384 5.384 7 C 0.377 3.623 8 O -0.461 6.461 9 C -0.575 4.575 10 H 0.087 0.913 11 C -0.133 4.133 12 N -0.398 5.398 13 Si 0.733 3.267 14 H -0.197 1.197 15 H -0.204 1.204 16 H -0.189 1.189 17 C 0.001 3.999 18 H 0.069 0.931 19 H 0.071 0.929 20 H 0.081 0.919 21 H 0.074 0.926 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.662 7.830 7.721 11.016 hybrid contribution -0.007 -0.871 0.456 0.983 sum -0.669 6.959 8.176 10.757 Atomic orbital electron populations 1.21677 0.93935 1.02426 1.00731 1.21802 0.95853 0.94607 0.96205 1.21697 1.00707 0.95211 1.01325 1.22747 1.00726 0.95497 0.97185 1.21550 1.00394 0.94876 0.83445 1.48667 1.80089 1.04747 1.04941 1.18029 0.76299 0.83032 0.84929 1.90604 1.55631 1.85332 1.14511 1.20899 1.53801 0.89084 0.93737 0.91317 1.25741 0.92681 1.00492 0.94431 1.70031 1.35379 1.31205 1.03148 0.86368 0.78894 0.81922 0.79561 1.19726 1.20425 1.18891 1.21913 0.98632 0.83486 0.95905 0.93142 0.92912 0.91939 0.92636 0.92693 0.92814 0.91226 0.91432 0.93050 0.93146 0.92111 0.93871 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 8.59 37.15 0.32 -1.61 16 2 C -0.08 -1.29 0.96 -152.24 -0.15 -1.43 16 3 C -0.13 -1.62 8.68 37.16 0.32 -1.29 16 4 C -0.12 -1.83 5.91 -24.90 -0.15 -1.98 16 5 C 0.12 2.35 5.73 -3.07 -0.02 2.33 16 6 N -0.64 -15.45 3.31 -172.04 -0.57 -16.02 16 7 C 0.57 17.00 7.78 -12.98 -0.10 16.90 16 8 O -0.58 -19.50 15.27 5.20 0.08 -19.42 16 9 C -0.54 -15.65 9.06 -35.63 -0.32 -15.98 16 10 H 0.07 1.84 7.16 -52.49 -0.38 1.47 16 11 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 12 N -0.77 -23.53 11.83 55.55 0.66 -22.88 16 13 Si 0.91 20.49 29.56 -169.99 -5.02 15.47 16 14 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 15 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 17 C 0.12 2.54 5.85 -2.41 -0.01 2.52 16 18 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 19 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 20 H 0.06 1.07 7.91 -51.93 -0.41 0.66 16 21 H 0.05 0.66 8.07 -51.93 -0.42 0.24 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.88 8.04 -51.93 -0.42 0.46 16 25 H 0.07 0.92 8.04 -51.93 -0.42 0.50 16 26 H 0.05 0.99 8.14 -51.92 -0.42 0.56 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.27 7.42 8.29 -40.82 -0.34 7.08 16 29 H 0.04 0.86 7.99 -51.93 -0.41 0.45 16 30 H 0.06 1.37 7.95 -51.93 -0.41 0.96 16 LS Contribution 251.66 15.07 3.79 3.79 Total: -1.00 -34.30 251.66 -5.81 -40.11 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -4.54 Total: -2.87 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -0.20 Total: 1.82 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.09 Total: -38.90 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: 0.08 Total: -19.42 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -34.30 -5.81 -40.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087254170.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.472 kcal (2) G-P(sol) polarization free energy of solvation -34.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds