Wall clock time and date at job start Sun Mar 29 2020 21:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99939 * 2 1 4 4 H 1.48494 * 109.47200 * 270.00639 * 3 2 1 5 5 H 1.48507 * 109.46719 * 30.00376 * 3 2 1 6 6 H 1.48500 * 109.47274 * 149.99926 * 3 2 1 7 7 C 1.37873 * 120.00382 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00227 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99633 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46976 * 180.02562 * 9 7 2 11 11 C 1.48523 * 111.00299 * 170.00184 * 10 9 7 12 12 C 1.54279 * 104.71733 * 159.27750 * 11 10 9 13 13 H 1.08994 * 112.38289 * 99.15117 * 12 11 10 14 14 C 1.54289 * 108.81480 * 224.27563 * 12 11 10 15 15 N 1.48514 * 104.81552 * 135.67043 * 14 12 11 16 16 C 1.48628 * 104.15355 * 320.41896 * 15 14 12 17 17 C 1.54282 * 104.78697 * 39.57360 * 16 15 14 18 18 H 1.09007 * 112.84003 * 98.90120 * 17 16 15 19 19 C 1.48521 * 111.00316 * 285.40009 * 10 9 7 20 20 H 0.97003 * 120.00273 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47188 * 60.00866 * 9 7 2 22 22 H 1.09001 * 109.47287 * 300.00178 * 9 7 2 23 23 H 1.09005 * 110.38307 * 40.46433 * 11 10 9 24 24 H 1.09001 * 110.47912 * 278.13798 * 11 10 9 25 25 H 1.09002 * 110.38840 * 254.53690 * 14 12 11 26 26 H 1.09000 * 110.38832 * 16.80508 * 14 12 11 27 27 H 1.00897 * 111.00519 * 79.87243 * 15 14 12 28 28 H 1.08993 * 110.28757 * 280.77139 * 16 15 14 29 29 H 1.08997 * 110.41781 * 158.43768 * 16 15 14 30 30 H 1.08999 * 110.38699 * 319.53231 * 19 10 9 31 31 H 1.08998 * 110.38808 * 81.79604 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 6 1.5138 -4.9076 0.2402 12 6 2.4826 -5.9783 -0.3031 13 1 3.0705 -6.4453 0.4870 14 6 1.6775 -7.0078 -1.1230 15 7 2.4851 -7.2322 -2.3490 16 6 2.9952 -5.8811 -2.7005 17 6 3.3554 -5.2321 -1.3480 18 1 4.4199 -5.2907 -1.1207 19 6 2.8315 -3.7809 -1.3373 20 1 -0.4851 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8904 22 1 0.6247 -2.5570 0.8897 23 1 0.5692 -4.9394 -0.3029 24 1 1.3430 -5.0559 1.3065 25 1 1.5692 -7.9374 -0.5642 26 1 0.6983 -6.6050 -1.3819 27 1 3.2463 -7.8695 -2.1690 28 1 2.2200 -5.3039 -3.2043 29 1 3.8806 -5.9612 -3.3311 30 1 2.0902 -3.6390 -2.1237 31 1 3.6546 -3.0772 -1.4609 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088287367.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:47 Heat of formation + Delta-G solvation = 7.488467 kcal Electronic energy + Delta-G solvation = -12677.425697 eV Core-core repulsion = 10572.286593 eV Total energy + Delta-G solvation = -2105.139104 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.66266 -35.54603 -32.68325 -30.23609 -29.93099 -26.32660 -25.35378 -22.80107 -21.65904 -20.05568 -19.03703 -16.81392 -16.25812 -14.90649 -14.80257 -14.38939 -14.14365 -12.99500 -12.71647 -12.68619 -11.99419 -11.75491 -11.68695 -11.10937 -10.93258 -10.71190 -10.60855 -10.51800 -10.40685 -10.21220 -9.81730 -9.20169 -8.60846 -8.42907 -7.38848 -6.02474 -4.03942 3.31882 3.37813 3.42618 4.32062 4.43118 4.77026 4.91744 4.95078 5.32472 5.39353 5.51894 5.53737 5.56174 5.71677 5.85801 6.05924 6.09470 6.19060 6.31655 6.50860 6.53736 6.63151 6.72818 7.13984 7.28408 7.36366 7.77729 7.99090 8.16931 8.50904 9.03861 9.60392 11.08558 Molecular weight = 196.13amu Principal moments of inertia in cm(-1) A = 0.069585 B = 0.008395 C = 0.008003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.289232 B = 3334.471824 C = 3497.750108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.182 3.818 10 N -0.509 5.509 11 C 0.039 3.961 12 C -0.124 4.124 13 H 0.082 0.918 14 C 0.043 3.957 15 N -0.672 5.672 16 C 0.043 3.957 17 C -0.127 4.127 18 H 0.082 0.918 19 C 0.055 3.945 20 H 0.261 0.739 21 H -0.006 1.006 22 H 0.029 0.971 23 H 0.037 0.963 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.332 0.668 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.039 0.961 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.850 -11.469 -2.777 12.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.056 3.944 10 N -0.233 5.233 11 C -0.090 4.090 12 C -0.144 4.144 13 H 0.101 0.899 14 C -0.087 4.087 15 N -0.297 5.297 16 C -0.087 4.087 17 C -0.147 4.147 18 H 0.101 0.899 19 C -0.074 4.074 20 H 0.071 0.929 21 H 0.012 0.988 22 H 0.047 0.953 23 H 0.055 0.945 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.099 0.901 27 H 0.146 0.854 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.498 -11.268 -2.874 12.468 hybrid contribution 0.409 1.086 0.177 1.174 sum 4.907 -10.182 -2.697 11.620 Atomic orbital electron populations 1.69958 1.06073 1.26778 1.51124 1.25002 0.94881 0.99356 0.95462 0.86489 0.79810 0.83044 0.78036 1.20724 1.21221 1.19777 1.21130 0.93508 0.89883 1.49902 0.91965 1.19879 0.90278 0.88017 0.96206 1.65485 1.29872 1.02247 1.25703 1.23104 0.94979 0.90621 1.00325 1.23243 0.96982 0.96383 0.97823 0.89933 1.23201 0.97901 0.98114 0.89512 1.63390 1.24211 1.09636 1.32441 1.23215 0.99685 0.89630 0.96142 1.23300 0.99631 0.96924 0.94879 0.89930 1.22976 0.98909 0.93665 0.91839 0.92921 0.98828 0.95291 0.94471 0.91254 0.91223 0.90145 0.85370 0.90036 0.91139 0.94282 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.57 8.97 -34.44 -0.31 -14.87 16 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.18 4.87 4.59 -4.98 -0.02 4.85 16 10 N -0.51 -11.35 5.32 -231.60 -1.23 -12.58 16 11 C 0.04 0.71 5.99 -2.26 -0.01 0.70 16 12 C -0.12 -1.83 4.12 -88.08 -0.36 -2.19 16 13 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 14 C 0.04 0.56 7.00 -2.26 -0.02 0.54 16 15 N -0.67 -8.48 7.63 -109.75 -0.84 -9.32 16 16 C 0.04 0.58 7.01 -2.20 -0.02 0.56 16 17 C -0.13 -1.93 4.12 -88.08 -0.36 -2.29 16 18 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 19 C 0.05 1.07 5.65 -2.26 -0.01 1.06 16 20 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 21 H -0.01 -0.17 7.77 -51.93 -0.40 -0.58 16 22 H 0.03 0.83 8.08 -51.93 -0.42 0.41 16 23 H 0.04 0.70 7.01 -51.93 -0.36 0.33 16 24 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.08 1.15 7.15 -51.93 -0.37 0.78 16 27 H 0.33 3.53 8.92 -39.29 -0.35 3.18 16 28 H 0.08 1.21 7.15 -51.93 -0.37 0.84 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.04 0.80 6.76 -51.93 -0.35 0.45 16 31 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 LS Contribution 247.84 15.07 3.73 3.73 Total: -1.00 -30.33 247.84 -8.55 -38.87 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -4.71 Total: -1.03 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -1.21 Total: -10.18 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: -1.33 Total: -48.31 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -30.33 -8.55 -38.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088287367.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.361 kcal (2) G-P(sol) polarization free energy of solvation -30.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds