Wall clock time and date at job start Sun Mar 29 2020 21:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00263 * 2 1 4 4 H 1.48502 * 109.47048 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46787 * 300.00021 * 3 2 1 6 6 H 1.48500 * 109.46955 * 59.99814 * 3 2 1 7 7 C 1.37882 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00030 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99870 * 0.02562 * 7 2 1 10 10 O 1.42899 * 109.47029 * 180.02562 * 9 7 2 11 11 C 1.42899 * 113.99809 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47059 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.47362 * 179.97438 * 12 11 10 14 14 C 1.36890 * 126.39499 * 269.96938 * 13 12 11 15 15 C 1.34669 * 106.81617 * 180.02562 * 14 13 12 16 16 N 1.34134 * 108.02026 * 0.02562 * 15 14 13 17 17 C 1.30493 * 109.25480 * 0.02562 * 16 15 14 18 18 H 0.97011 * 119.99715 * 359.97438 * 1 2 3 19 19 H 1.09003 * 109.47618 * 59.99317 * 9 7 2 20 20 H 1.09008 * 109.47039 * 299.99691 * 9 7 2 21 21 H 1.09004 * 109.47746 * 59.99583 * 11 10 9 22 22 H 1.09005 * 109.47437 * 299.99527 * 11 10 9 23 23 H 1.09000 * 109.47395 * 59.99710 * 12 11 10 24 24 H 1.08994 * 109.47038 * 299.99865 * 12 11 10 25 25 H 1.07996 * 126.59258 * 0.08195 * 14 13 12 26 26 H 1.08002 * 125.99042 * 180.26007 * 15 14 13 27 27 H 1.08006 * 125.64594 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 2.1795 -3.5853 0.0017 11 6 1.5649 -4.8753 0.0024 12 6 2.6478 -5.9562 0.0030 13 7 2.0178 -7.2788 0.0044 14 6 1.6693 -8.0114 1.1070 15 6 1.1239 -9.1574 0.6568 16 7 1.1393 -9.1257 -0.6840 17 6 1.6742 -8.0039 -1.0818 18 1 -0.4850 0.8402 0.0004 19 1 0.6245 -2.5571 -0.8896 20 1 0.6240 -2.5567 0.8904 21 1 0.9450 -4.9831 -0.8877 22 1 0.9444 -4.9818 0.8923 23 1 3.2680 -5.8487 0.8930 24 1 3.2680 -5.8497 -0.8869 25 1 1.8049 -7.7249 2.1394 26 1 0.7378 -9.9596 1.2683 27 1 1.8169 -7.7042 -2.1096 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090568896.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:00 Heat of formation + Delta-G solvation = 9.395778 kcal Electronic energy + Delta-G solvation = -11623.551936 eV Core-core repulsion = 9382.662445 eV Total energy + Delta-G solvation = -2240.889491 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.94901 -37.13172 -34.21919 -32.75707 -29.59452 -28.94216 -26.91427 -23.18731 -22.39579 -21.26853 -20.75287 -17.37528 -16.59209 -15.56886 -15.39399 -15.11545 -14.34004 -14.14720 -13.74935 -13.39393 -13.10744 -12.74588 -12.17618 -11.28167 -11.02067 -10.93766 -10.86799 -10.23114 -9.95940 -9.54688 -9.24527 -9.03569 -8.48501 -8.36035 -6.21800 -4.24867 2.10364 2.78879 3.22185 3.22534 3.29343 3.35210 4.25238 4.63973 4.75426 4.76781 5.00999 5.14931 5.39050 5.44811 5.54129 5.65699 5.84304 5.94660 6.35645 6.77082 6.91566 7.22199 7.25716 7.66271 7.99041 8.10865 8.34549 8.86783 9.40476 10.89595 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.107118 B = 0.005661 C = 0.005586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 261.331470 B = 4945.323036 C = 5010.890364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.910 3.090 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.519 4.519 8 H 0.068 0.932 9 C 0.197 3.803 10 O -0.394 6.394 11 C 0.051 3.949 12 C 0.106 3.894 13 N -0.452 5.452 14 C -0.054 4.054 15 C -0.037 4.037 16 N -0.501 5.501 17 C 0.182 3.818 18 H 0.265 0.735 19 H 0.008 0.992 20 H 0.008 0.992 21 H 0.045 0.955 22 H 0.044 0.956 23 H 0.099 0.901 24 H 0.102 0.898 25 H 0.173 0.827 26 H 0.167 0.833 27 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.609 -11.515 1.009 12.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.558 4.558 8 H 0.087 0.913 9 C 0.123 3.877 10 O -0.313 6.313 11 C -0.027 4.027 12 C -0.017 4.017 13 N -0.135 5.135 14 C -0.187 4.187 15 C -0.185 4.185 16 N -0.219 5.219 17 C -0.101 4.101 18 H 0.075 0.925 19 H 0.026 0.974 20 H 0.025 0.975 21 H 0.063 0.937 22 H 0.062 0.938 23 H 0.117 0.883 24 H 0.120 0.880 25 H 0.190 0.810 26 H 0.185 0.815 27 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 3.430 -11.815 0.495 12.313 hybrid contribution 0.239 1.577 0.584 1.698 sum 3.669 -10.238 1.078 10.929 Atomic orbital electron populations 1.69970 1.06155 1.27293 1.50104 1.24968 0.95012 0.99562 0.94926 0.86247 0.79970 0.82351 0.77736 1.19418 1.20734 1.20737 1.21061 0.94143 0.89129 1.51419 0.91346 1.20281 0.88631 0.83064 0.95730 1.87800 1.35760 1.12428 1.95322 1.22443 0.94106 0.85740 1.00450 1.21755 0.95643 0.78499 1.05783 1.45552 1.45270 1.15633 1.07045 1.22801 1.07966 0.94986 0.92977 1.22273 1.06198 0.98667 0.91336 1.70278 1.19716 1.19817 1.12112 1.25035 1.01881 0.89251 0.93902 0.92527 0.97404 0.97456 0.93698 0.93777 0.88272 0.88008 0.80969 0.81529 0.77948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.33 13.29 55.43 0.74 -25.59 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 3 Si 0.91 21.29 29.54 -169.99 -5.02 16.27 15 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 7 C -0.52 -14.87 9.43 -34.44 -0.32 -15.20 15 8 H 0.07 1.93 7.81 -52.49 -0.41 1.52 15 9 C 0.20 5.23 5.69 36.00 0.20 5.44 15 10 O -0.39 -8.91 10.33 -35.23 -0.36 -9.27 15 11 C 0.05 0.88 6.26 37.16 0.23 1.12 15 12 C 0.11 1.39 6.52 -4.04 -0.03 1.36 15 13 N -0.45 -5.91 2.75 -118.58 -0.33 -6.24 15 14 C -0.05 -0.67 11.58 -16.56 -0.19 -0.86 15 15 C -0.04 -0.48 11.87 -17.81 -0.21 -0.69 15 16 N -0.50 -7.50 11.25 -14.66 -0.16 -7.66 15 17 C 0.18 2.41 12.56 -90.38 -1.14 1.28 15 18 H 0.27 7.26 8.31 -40.82 -0.34 6.92 15 19 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 15 20 H 0.01 0.21 8.14 -51.92 -0.42 -0.21 15 21 H 0.04 0.77 8.14 -51.93 -0.42 0.35 15 22 H 0.04 0.77 8.14 -51.93 -0.42 0.34 15 23 H 0.10 1.21 8.14 -51.93 -0.42 0.79 15 24 H 0.10 1.20 8.14 -51.93 -0.42 0.78 15 25 H 0.17 1.67 8.06 -52.49 -0.42 1.25 15 26 H 0.17 1.73 8.06 -52.49 -0.42 1.30 15 27 H 0.20 2.06 8.06 -52.48 -0.42 1.63 15 LS Contribution 247.00 15.07 3.72 3.72 Total: -1.00 -31.94 247.00 -6.32 -38.26 By element: Atomic # 1 Polarization: -0.09 SS G_CDS: -3.35 Total: -3.44 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -1.55 Total: -6.04 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.25 Total: -39.50 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -0.36 Total: -9.27 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -31.94 -6.32 -38.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090568896.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.655 kcal (2) G-P(sol) polarization free energy of solvation -31.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds