Wall clock time and date at job start Sun Mar 29 2020 21:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86808 * 119.99769 * 2 1 4 4 H 1.48497 * 109.46885 * 274.97969 * 3 2 1 5 5 H 1.48496 * 109.46929 * 34.97789 * 3 2 1 6 6 H 1.48495 * 109.46979 * 154.98200 * 3 2 1 7 7 C 1.38809 * 120.00478 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00227 * 186.72345 * 7 2 1 9 9 N 1.36943 * 119.99914 * 6.72624 * 7 2 1 10 10 C 1.47396 * 126.01933 * 353.98679 * 9 7 2 11 11 C 1.54480 * 107.15855 * 181.47800 * 10 9 7 12 12 C 1.55962 * 102.65559 * 22.76141 * 11 10 9 13 13 H 1.09003 * 113.39880 * 202.91630 * 12 11 10 14 14 C 1.51573 * 105.96024 * 79.33361 * 12 11 10 15 15 C 1.52674 * 110.43258 * 196.60339 * 14 12 11 16 16 C 1.53243 * 108.67541 * 61.88461 * 15 14 12 17 17 C 1.52871 * 108.41774 * 296.80332 * 16 15 14 18 18 C 1.46522 * 126.02201 * 173.99292 * 9 7 2 19 19 H 1.09001 * 108.48144 * 270.34022 * 18 9 7 20 20 H 0.96999 * 120.00235 * 0.02562 * 1 2 3 21 21 H 1.09008 * 109.89892 * 300.85949 * 10 9 7 22 22 H 1.08996 * 109.90266 * 62.09410 * 10 9 7 23 23 H 1.08996 * 110.77794 * 141.05344 * 11 10 9 24 24 H 1.08999 * 110.77358 * 264.47306 * 11 10 9 25 25 H 1.09000 * 109.42711 * 76.32858 * 14 12 11 26 26 H 1.09000 * 109.27001 * 316.77650 * 14 12 11 27 27 H 1.08998 * 109.60542 * 302.12834 * 15 14 12 28 28 H 1.09000 * 109.60420 * 181.64227 * 15 14 12 29 29 H 1.09004 * 109.67843 * 177.06950 * 16 15 14 30 30 H 1.08998 * 109.67832 * 56.53406 * 16 15 14 31 31 H 1.08995 * 109.12377 * 298.76185 * 17 16 15 32 32 H 1.09000 * 109.12723 * 179.67104 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5041 2.6200 0.8026 6 1 3.5964 1.4122 0.5921 7 6 2.0103 -1.2021 0.0005 8 1 3.0848 -1.2052 0.1100 9 7 1.3328 -2.3841 -0.1378 10 6 -0.1320 -2.5447 -0.1711 11 6 -0.4218 -4.0563 -0.3037 12 6 0.8844 -4.7044 0.2495 13 1 1.0493 -5.7203 -0.1097 14 6 0.7743 -4.6402 1.7599 15 6 2.1409 -4.8610 2.4038 16 6 3.0827 -3.7392 1.9533 17 6 3.2612 -3.8378 0.4382 18 6 1.9362 -3.7118 -0.2788 19 1 2.0950 -3.9084 -1.3391 20 1 -0.4850 0.8400 -0.0004 21 1 -0.5682 -2.1628 0.7521 22 1 -0.5444 -2.0113 -1.0275 23 1 -1.2813 -4.3399 0.3036 24 1 -0.5773 -4.3300 -1.3472 25 1 0.0854 -5.4106 2.1063 26 1 0.3940 -3.6612 2.0515 27 1 2.5423 -5.8241 2.0886 28 1 2.0413 -4.8411 3.4890 29 1 4.0491 -3.8517 2.4448 30 1 2.6505 -2.7720 2.2097 31 1 3.7095 -4.8006 0.1934 32 1 3.9252 -3.0406 0.1042 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132761568.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:25:22 Heat of formation + Delta-G solvation = 5.615831 kcal Electronic energy + Delta-G solvation = -13259.695112 eV Core-core repulsion = 11219.900715 eV Total energy + Delta-G solvation = -2039.794396 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.08538 -34.20807 -32.46195 -30.87850 -28.15789 -27.08108 -24.25697 -22.06452 -20.96845 -19.80673 -18.26194 -16.27404 -15.06753 -14.64191 -13.98934 -13.61909 -13.55413 -13.39039 -12.02022 -11.89825 -11.42539 -11.26514 -11.11220 -10.88776 -10.81838 -10.71512 -10.47535 -10.06322 -9.92135 -9.65866 -9.48004 -9.20418 -9.16043 -8.49415 -6.69849 -5.64120 -2.94424 3.44081 3.49422 3.51125 4.56719 5.25219 5.36898 5.40497 5.60213 5.72412 5.87220 5.93263 6.00504 6.11513 6.15806 6.27874 6.34326 6.45833 6.50993 6.52415 6.66498 6.68617 6.90712 6.96134 7.09138 7.12367 7.27125 7.66577 7.73755 7.90863 8.35225 9.30757 9.93344 10.62469 11.48809 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.042575 B = 0.014315 C = 0.012188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.510492 B = 1955.583706 C = 2296.817474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.218 4.218 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.178 3.822 11 C -0.146 4.146 12 C -0.101 4.101 13 H 0.069 0.931 14 C -0.105 4.105 15 C -0.113 4.113 16 C -0.112 4.112 17 C -0.114 4.114 18 C 0.170 3.830 19 H 0.013 0.987 20 H 0.250 0.750 21 H 0.041 0.959 22 H 0.042 0.958 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.045 0.955 26 H 0.073 0.927 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.044 0.956 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.353 -8.688 2.212 9.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.207 1.207 7 C -0.346 4.346 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.054 3.946 11 C -0.184 4.184 12 C -0.120 4.120 13 H 0.088 0.912 14 C -0.143 4.143 15 C -0.151 4.151 16 C -0.150 4.150 17 C -0.152 4.152 18 C 0.063 3.937 19 H 0.031 0.969 20 H 0.060 0.940 21 H 0.059 0.941 22 H 0.060 0.940 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.092 0.908 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.297 -8.440 2.225 9.025 hybrid contribution 0.391 0.941 -0.061 1.021 sum 2.688 -7.499 2.165 8.255 Atomic orbital electron populations 1.69978 1.04852 1.24765 1.57370 1.24778 0.95619 0.97450 1.02767 0.86189 0.78691 0.84075 0.77418 1.21812 1.21939 1.20727 1.19007 0.91028 0.82438 1.42134 0.90407 1.44308 1.01418 1.00511 1.85632 1.21195 0.84516 0.88444 1.00488 1.23170 0.96434 0.99573 0.99253 1.22099 0.96867 0.97516 0.95559 0.91245 1.21193 0.96201 1.01947 0.94910 1.21477 0.96497 0.98261 0.98856 1.21454 0.97801 0.99936 0.95773 1.21249 0.98355 0.99918 0.95693 1.20312 0.91254 0.86701 0.95464 0.96930 0.93958 0.94106 0.94029 0.92452 0.93010 0.93651 0.90829 0.93118 0.93156 0.93717 0.90365 0.93550 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.42 10.42 55.49 0.58 -26.84 16 2 C -0.01 -0.29 5.48 -17.43 -0.10 -0.39 16 3 Si 0.91 22.39 29.56 -169.99 -5.02 17.37 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.22 -6.02 9.19 -15.06 -0.14 -6.15 16 8 H 0.08 2.09 6.62 -52.48 -0.35 1.74 16 9 N -0.59 -15.08 3.06 -164.49 -0.50 -15.58 16 10 C 0.18 4.41 4.62 -2.78 -0.01 4.40 16 11 C -0.15 -2.86 6.30 -24.37 -0.15 -3.01 16 12 C -0.10 -1.85 3.60 -89.25 -0.32 -2.17 16 13 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 14 C -0.11 -1.85 4.82 -27.62 -0.13 -1.98 16 15 C -0.11 -1.82 5.91 -26.77 -0.16 -1.98 16 16 C -0.11 -2.02 5.89 -26.67 -0.16 -2.18 16 17 C -0.11 -2.15 5.01 -27.71 -0.14 -2.29 16 18 C 0.17 3.60 2.94 -68.33 -0.20 3.40 16 19 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 20 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 21 H 0.04 1.11 7.20 -51.92 -0.37 0.74 16 22 H 0.04 1.15 7.42 -51.93 -0.39 0.76 16 23 H 0.06 1.02 7.94 -51.93 -0.41 0.61 16 24 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 1.52 6.83 -51.93 -0.35 1.17 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.67 7.56 -51.93 -0.39 1.28 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.20 6.92 -51.93 -0.36 0.84 16 LS Contribution 242.09 15.07 3.65 3.65 Total: -1.00 -29.20 242.09 -7.96 -37.16 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -5.14 Total: -3.40 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -1.51 Total: -12.35 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 0.07 Total: -42.42 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -29.20 -7.96 -37.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132761568.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.774 kcal (2) G-P(sol) polarization free energy of solvation -29.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds