Wall clock time and date at job start Sun Mar 29 2020 21:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46861 * 2 1 4 4 H 1.09004 * 109.47188 * 54.81611 * 3 2 1 5 5 C 1.50701 * 109.47208 * 174.81294 * 3 2 1 6 6 H 1.07999 * 120.00518 * 120.00028 * 5 3 2 7 7 C 1.37886 * 120.00110 * 300.00666 * 5 3 2 8 8 N 1.31509 * 119.99831 * 179.72556 * 7 5 3 9 9 Si 1.86798 * 119.99727 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.47248 * 90.00074 * 9 7 5 11 11 H 1.48496 * 109.47073 * 210.00093 * 9 7 5 12 12 H 1.48506 * 109.47356 * 330.00107 * 9 7 5 13 13 N 1.46891 * 109.47622 * 294.81692 * 3 2 1 14 14 C 1.46897 * 111.00261 * 154.14163 * 13 3 2 15 15 C 1.54635 * 111.03619 * 267.73230 * 14 13 3 16 16 C 1.51163 * 104.69892 * 217.36144 * 15 14 13 17 17 C 1.30528 * 111.11844 * 16.38033 * 16 15 14 18 18 C 1.51099 * 111.10357 * 0.03636 * 17 16 15 19 19 H 1.09004 * 109.46971 * 185.21796 * 1 2 3 20 20 H 1.09001 * 109.47253 * 305.21852 * 1 2 3 21 21 H 1.09003 * 109.47222 * 65.21788 * 1 2 3 22 22 H 1.08998 * 109.46983 * 240.00634 * 2 1 3 23 23 H 1.08998 * 109.47582 * 120.00578 * 2 1 3 24 24 H 0.97004 * 119.99557 * 180.02562 * 8 7 5 25 25 H 1.00900 * 110.99794 * 278.09246 * 13 3 2 26 26 H 1.08997 * 110.91519 * 31.70039 * 14 13 3 27 27 H 1.08999 * 110.38808 * 336.15215 * 15 14 13 28 28 H 1.09001 * 110.38557 * 98.52236 * 15 14 13 29 29 H 1.08000 * 124.43085 * 196.40732 * 16 15 14 30 30 H 1.07998 * 124.44594 * 180.02562 * 17 16 15 31 31 H 1.09001 * 110.38904 * 224.74737 * 18 17 16 32 32 H 1.09002 * 110.38745 * 102.37226 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6027 1.9825 0.8399 5 6 3.5415 1.4446 0.1285 6 1 4.1492 1.8883 -0.6462 7 6 4.1395 0.8797 1.2350 8 7 5.4500 0.8767 1.3445 9 14 3.0885 0.1127 2.5753 10 1 2.8676 -1.3237 2.2699 11 1 3.7822 0.2399 3.8821 12 1 1.7799 0.8120 2.6394 13 7 1.6551 2.0980 -1.2570 14 6 1.5560 3.5533 -1.0830 15 6 0.1127 3.9716 -0.7179 16 6 -0.1041 5.2778 -1.4470 17 6 0.7929 5.4505 -2.3793 18 6 1.7572 4.2883 -2.4286 19 1 -0.3633 -1.0234 0.0935 20 1 -0.3634 0.5926 0.8396 21 1 -0.3634 0.4308 -0.9330 22 1 1.8933 -0.5137 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 5.8708 0.4790 2.1229 25 1 2.2994 1.8655 -1.9979 26 1 2.2664 3.9050 -0.3350 27 1 -0.5988 3.2215 -1.0630 28 1 0.0203 4.1168 0.3585 29 1 -0.8970 5.9767 -1.2251 30 1 0.8396 6.3111 -3.0302 31 1 2.7823 4.6487 -2.5148 32 1 1.5144 3.6285 -3.2616 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132915001.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:59 Heat of formation + Delta-G solvation = 12.127772 kcal Electronic energy + Delta-G solvation = -12615.950869 eV Core-core repulsion = 10576.438852 eV Total energy + Delta-G solvation = -2039.512017 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.43383 -35.61571 -32.10576 -31.28387 -27.77451 -27.61409 -25.56058 -22.45155 -19.98274 -19.73141 -18.35049 -16.86372 -15.68794 -15.27117 -14.78895 -13.50231 -13.46490 -12.70119 -12.30029 -12.23727 -11.87983 -11.77642 -11.57383 -11.39827 -10.92473 -10.82436 -10.69953 -10.29890 -10.15495 -9.73790 -9.42675 -9.20115 -8.57646 -8.55690 -7.35676 -6.12438 -4.13236 2.54597 3.26384 3.36885 3.39584 4.37574 5.03219 5.08230 5.16761 5.24506 5.63405 5.70704 6.03593 6.06394 6.11110 6.19135 6.25560 6.30271 6.38742 6.40322 6.69096 6.73167 6.76548 6.80400 7.01493 7.13804 7.20240 7.30750 7.58739 8.08689 8.40477 8.51264 8.90453 9.51327 11.00506 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.040598 B = 0.011566 C = 0.010197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.523423 B = 2420.280536 C = 2745.128430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C 0.183 3.817 4 H 0.032 0.968 5 C -0.546 4.546 6 H 0.072 0.928 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.264 1.264 13 N -0.672 5.672 14 C 0.088 3.912 15 C -0.093 4.093 16 C -0.165 4.165 17 C -0.170 4.170 18 C -0.103 4.103 19 H 0.031 0.969 20 H 0.039 0.961 21 H 0.060 0.940 22 H 0.057 0.943 23 H 0.044 0.956 24 H 0.264 0.736 25 H 0.335 0.665 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.065 0.935 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.672 4.503 -4.222 11.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C 0.074 3.926 4 H 0.050 0.950 5 C -0.584 4.584 6 H 0.090 0.910 7 C -0.131 4.131 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.205 1.205 11 H -0.226 1.226 12 H -0.189 1.189 13 N -0.302 5.302 14 C -0.023 4.023 15 C -0.130 4.130 16 C -0.184 4.184 17 C -0.188 4.188 18 C -0.140 4.140 19 H 0.051 0.949 20 H 0.059 0.941 21 H 0.079 0.921 22 H 0.076 0.924 23 H 0.062 0.938 24 H 0.073 0.927 25 H 0.153 0.847 26 H 0.079 0.921 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.083 0.917 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.185 4.326 -4.013 11.771 hybrid contribution 0.601 -0.171 0.877 1.076 sum -9.584 4.155 -3.136 10.906 Atomic orbital electron populations 1.21722 0.97585 0.99076 1.01511 1.21814 0.93824 0.99408 1.00341 1.19618 0.94201 0.90574 0.88233 0.95017 1.21768 0.90580 1.39047 1.07050 0.90983 1.25017 0.94778 0.95298 0.97972 1.69920 1.08949 1.45102 1.29638 0.86808 0.80651 0.79857 0.80652 1.20468 1.22640 1.18923 1.60803 1.54627 1.05688 1.09061 1.22224 0.95277 0.89255 0.95514 1.21455 0.98098 0.94338 0.99143 1.23327 0.98966 0.98022 0.98049 1.23182 0.97763 0.98620 0.99260 1.21552 0.98393 0.95390 0.98704 0.94945 0.94146 0.92087 0.92426 0.93790 0.92661 0.84688 0.92080 0.89994 0.92153 0.86642 0.86603 0.91659 0.90388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.74 37.16 0.36 -2.26 16 2 C -0.12 -2.54 5.11 -26.73 -0.14 -2.68 16 3 C 0.18 4.27 1.44 -68.87 -0.10 4.17 16 4 H 0.03 0.79 6.90 -51.93 -0.36 0.43 16 5 C -0.55 -15.06 8.95 -34.44 -0.31 -15.36 16 6 H 0.07 2.15 7.97 -52.49 -0.42 1.73 16 7 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 8 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 9 Si 0.89 22.13 24.41 -169.99 -4.15 17.98 16 10 H -0.28 -6.75 6.83 56.52 0.39 -6.36 16 11 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 12 H -0.26 -6.33 6.53 56.52 0.37 -5.96 16 13 N -0.67 -13.46 5.63 -99.16 -0.56 -14.02 16 14 C 0.09 1.63 3.23 -65.99 -0.21 1.41 16 15 C -0.09 -1.51 6.55 -26.80 -0.18 -1.69 16 16 C -0.17 -2.32 10.78 -35.67 -0.38 -2.71 16 17 C -0.17 -2.36 10.78 -35.70 -0.38 -2.75 16 18 C -0.10 -1.61 6.29 -26.83 -0.17 -1.78 16 19 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 20 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 21 H 0.06 1.07 7.91 -51.93 -0.41 0.66 16 22 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 23 H 0.04 1.03 3.22 -51.93 -0.17 0.86 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.34 6.74 8.07 -39.29 -0.32 6.42 16 26 H 0.06 1.30 7.75 -51.93 -0.40 0.89 16 27 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.08 1.18 8.02 -51.93 -0.42 0.76 16 LS Contribution 255.81 15.07 3.85 3.85 Total: -1.00 -28.92 255.81 -6.74 -35.66 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -5.05 Total: 4.82 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -1.60 Total: -21.67 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.22 Total: -40.65 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.15 Total: 17.98 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -28.92 -6.74 -35.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132915001.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.787 kcal (2) G-P(sol) polarization free energy of solvation -28.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds