Wall clock time and date at job start Sun Mar 29 2020 22:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08993 * 110.89211 * 54.29706 * 3 2 1 5 5 C 1.55160 * 111.00031 * 178.18171 * 3 2 1 6 6 C 1.54372 * 102.92049 * 153.54447 * 5 3 2 7 7 N 1.47026 * 107.28733 * 337.86240 * 6 5 3 8 8 C 1.34773 * 125.64595 * 178.94755 * 7 6 5 9 9 O 1.21693 * 119.99523 * 179.97438 * 8 7 6 10 10 C 1.46378 * 120.00509 * 359.95099 * 8 7 6 11 11 H 1.07996 * 119.99596 * 359.97438 * 10 8 7 12 12 C 1.40042 * 120.00214 * 180.02562 * 10 8 7 13 13 N 1.30675 * 119.99885 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 120.00021 * 180.02562 * 12 10 8 15 15 H 1.48492 * 109.47319 * 59.99386 * 14 12 10 16 16 H 1.48495 * 109.47340 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46696 * 299.99332 * 14 12 10 18 18 C 1.47419 * 108.70409 * 358.90227 * 7 6 5 19 19 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 21 21 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 22 22 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 23 23 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 24 24 H 1.08998 * 110.71543 * 271.93297 * 5 3 2 25 25 H 1.09000 * 110.72334 * 35.21108 * 5 3 2 26 26 H 1.08999 * 109.90139 * 218.41985 * 6 5 3 27 27 H 1.09008 * 109.97371 * 97.33717 * 6 5 3 28 28 H 0.97009 * 119.99649 * 180.02562 * 13 12 10 29 29 H 1.08996 * 110.37223 * 265.29400 * 18 7 6 30 30 H 1.08999 * 110.45981 * 143.01618 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6093 2.0070 0.8269 5 6 3.5903 1.4842 0.0460 6 6 3.9195 2.8329 -0.6291 7 7 2.7637 3.1988 -1.4608 8 6 2.6506 4.3212 -2.1983 9 8 1.6436 4.5209 -2.8517 10 6 3.7388 5.3001 -2.2130 11 1 4.6321 5.1232 -1.6325 12 6 3.6210 6.4666 -2.9789 13 7 2.5398 6.6809 -3.6808 14 14 5.0099 7.7155 -2.9981 15 1 6.2464 7.0729 -3.5110 16 1 4.6413 8.8524 -3.8795 17 1 5.2464 8.2140 -1.6194 18 6 1.7494 2.1342 -1.3554 19 1 -0.3635 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 3.9460 1.4709 1.0762 25 1 4.0154 0.6557 -0.5207 26 1 4.8071 2.7286 -1.2531 27 1 4.0875 3.5977 0.1293 28 1 2.4584 7.4888 -4.2116 29 1 1.8584 1.4238 -2.1748 30 1 0.7468 2.5617 -1.3558 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159701218.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:46 Heat of formation + Delta-G solvation = -54.213757 kcal Electronic energy + Delta-G solvation = -12643.353088 eV Core-core repulsion = 10437.819713 eV Total energy + Delta-G solvation = -2205.533375 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.59266 -36.00644 -33.21392 -32.44140 -29.56377 -27.90311 -26.00540 -23.47866 -21.53119 -19.88750 -19.05262 -16.65722 -15.50913 -15.39818 -14.35346 -14.17029 -13.36540 -13.27060 -12.80849 -12.70090 -12.16841 -11.83711 -11.50198 -11.29638 -11.07851 -10.96823 -10.76548 -10.51565 -10.26289 -10.22018 -10.10993 -10.07937 -8.82771 -7.60922 -7.12158 -6.17330 -4.62015 3.17035 3.21454 3.23678 4.10892 4.57775 4.64771 4.93560 5.07210 5.15859 5.46419 5.56637 5.65618 5.82131 5.84593 5.91577 6.06661 6.14258 6.17367 6.31416 6.36375 6.47736 6.57631 6.73431 6.76858 7.44464 7.47401 8.14263 8.46136 9.03983 9.54741 10.60667 10.79755 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.066502 B = 0.008845 C = 0.007954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.939668 B = 3164.726739 C = 3519.230517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.105 4.105 4 H 0.077 0.923 5 C -0.129 4.129 6 C 0.121 3.879 7 N -0.647 5.647 8 C 0.571 3.429 9 O -0.578 6.578 10 C -0.540 4.540 11 H 0.068 0.932 12 C 0.086 3.914 13 N -0.769 5.769 14 Si 0.909 3.091 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.268 1.268 18 C 0.121 3.879 19 H 0.049 0.951 20 H 0.052 0.948 21 H 0.058 0.942 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.269 0.731 29 H 0.043 0.957 30 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.846 -9.248 7.356 11.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.124 4.124 4 H 0.096 0.904 5 C -0.167 4.167 6 C -0.004 4.004 7 N -0.387 5.387 8 C 0.377 3.623 9 O -0.461 6.461 10 C -0.576 4.576 11 H 0.087 0.913 12 C -0.133 4.133 13 N -0.398 5.398 14 Si 0.733 3.267 15 H -0.193 1.193 16 H -0.205 1.205 17 H -0.193 1.193 18 C -0.003 4.003 19 H 0.068 0.932 20 H 0.071 0.929 21 H 0.077 0.923 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.171 -8.914 6.792 11.268 hybrid contribution 0.787 0.590 0.051 0.985 sum 1.958 -8.324 6.843 10.952 Atomic orbital electron populations 1.21790 0.95971 1.01076 1.02242 1.21440 0.95847 0.95841 1.01627 1.22427 0.95532 0.95743 0.98711 0.90431 1.22711 0.95669 0.97889 1.00385 1.21574 0.90653 0.94346 0.93823 1.48705 1.17046 1.21783 1.51193 1.18024 0.88087 0.78512 0.77668 1.90603 1.33020 1.76690 1.45775 1.20874 1.02690 1.03845 1.30223 0.91333 1.25738 0.95866 0.98117 0.93594 1.70022 1.25210 1.23914 1.20651 0.86417 0.81623 0.79835 0.78788 1.19254 1.20511 1.19252 1.21834 0.94113 0.90059 0.94275 0.93169 0.92880 0.92266 0.91947 0.92196 0.91236 0.91404 0.93080 0.92989 0.92031 0.93915 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.79 37.16 0.36 -1.43 16 2 C -0.11 -1.34 5.44 -26.73 -0.15 -1.49 16 3 C -0.10 -1.61 3.04 -88.47 -0.27 -1.87 16 4 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 5 C -0.13 -1.89 6.42 -24.87 -0.16 -2.05 16 6 C 0.12 2.33 6.05 -3.04 -0.02 2.31 16 7 N -0.65 -15.69 3.33 -172.14 -0.57 -16.26 16 8 C 0.57 17.12 7.78 -12.99 -0.10 17.02 16 9 O -0.58 -19.59 15.28 5.20 0.08 -19.51 16 10 C -0.54 -15.77 9.06 -35.63 -0.32 -16.09 16 11 H 0.07 1.84 7.16 -52.49 -0.38 1.46 16 12 C 0.09 2.47 5.50 -17.37 -0.10 2.38 16 13 N -0.77 -23.61 11.83 55.55 0.66 -22.95 16 14 Si 0.91 20.51 29.56 -169.99 -5.02 15.48 16 15 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 16 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 18 C 0.12 2.46 5.71 -2.53 -0.01 2.45 16 19 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 20 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 21 H 0.06 0.76 7.59 -51.93 -0.39 0.37 16 22 H 0.06 0.76 8.04 -51.93 -0.42 0.34 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.07 0.92 8.04 -51.93 -0.42 0.50 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 28 H 0.27 7.47 8.29 -40.82 -0.34 7.13 16 29 H 0.04 0.85 7.96 -51.93 -0.41 0.44 16 30 H 0.06 1.35 8.00 -51.93 -0.42 0.94 16 LS Contribution 252.17 15.07 3.80 3.80 Total: -1.00 -34.53 252.17 -6.35 -40.88 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -4.53 Total: -2.67 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -0.76 Total: 1.23 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.08 Total: -39.21 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: 0.08 Total: -19.51 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -34.53 -6.35 -40.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159701218.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.337 kcal (2) G-P(sol) polarization free energy of solvation -34.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds